New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	788000 =	309 (0.810)	45 (0.120)	2/166	39.2	0.15	intergenic (+72/+64)	pntB/RCAP_rcc00717	pyridine nucleotide transhydrogenase subunit beta/hypothetical protein
	?	NC_014034	2330313 =	185 (0.400)					intergenic (+288/+24)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

CCTGGGCGCTGCTGCTGATCTCGCTCAAGCTGCTCTGGGACCTTCTTCCCTGAGCCCCCCTGTCACCTTGCGGCAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCGGGTCGCC....................................................................................................  <  NC_014034/788116‑788000 ....................................................................................................GCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGTCGAGGTC  >  NC_014034/2330313‑2330412                                                                                                                                                                                                                                                                                                  gcCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCG                                               <  1:3913409/99‑1 (MQ=14)                                                                         cCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGA                                              <  1:5332044/100‑1 (MQ=11)                                                                           AAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAG                                            <  2:1662097/101‑1 (MQ=1)                                                                           AAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAG                                            <  2:2350690/101‑1 (MQ=1)                                                                           AAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAG                                            <  2:4819042/101‑1 (MQ=1)                                                                           AAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAG                                            <  2:8231772/101‑1 (MQ=1)                                                                                 cccGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCC                                      <  1:7144184/98‑1 (MQ=11)                                                                                  ccGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCT                                     <  1:3622330/99‑1 (MQ=1)                                                                                  ccGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCT                                     <  1:4263030/99‑1 (MQ=1)                                                                                   cGGGGGTCCGGGGGCGGCGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTT                                    <  2:3884057/100‑1 (MQ=1)                                                                                   cGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTT                                    <  1:2306776/100‑1 (MQ=1)                                                                                   cGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTT                                    <  1:7182019/100‑1 (MQ=1)                                                                                   cGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTT                                    <  2:3389751/100‑1 (MQ=1)                                                                                    GGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTC                                   <  2:7536419/101‑1 (MQ=1)                                                                                    GGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTC                                   <  2:3327024/101‑1 (MQ=1)                                                                                     ggaGTCCGGGGGCGGAGCCCCCGGGGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCT                                  <  2:9128374/98‑1 (MQ=0)                                                                                     GGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCT                                  <  2:4576452/101‑1 (MQ=1)                                                                                     GGGGTCCGGGGGCGAGGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCT                                  <  2:5351079/101‑1 (MQ=14)                                                                                     GGGGGCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCT                                  <  1:7322/101‑1 (MQ=1)                                                                                      GGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTT                                 <  2:6091866/101‑1 (MQ=1)                                                                                      GGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTT                                 <  2:6494659/101‑1 (MQ=1)                                                                                      GGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTT                                 <  1:3963894/101‑1 (MQ=1)                                                                                       GGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTC                                <  1:7414075/101‑1 (MQ=1)                                                                                       GGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTC                                <  1:2986037/101‑1 (MQ=1)                                                                                       GGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTC                                <  2:5644090/101‑1 (MQ=1)                                                                                        GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCG                               <  1:5555653/101‑1 (MQ=1)                                                                                         TCCGGGGGCGGAGCCCTCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGG                              <  2:7949400/101‑1 (MQ=1)                                                                                         TCCGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGG                              <  2:8469746/101‑1 (MQ=1)                                                                                           CGGGGGCGGCGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGA                            <  1:304192/101‑1 (MQ=1)                                                                                           CGGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGA                            <  2:1030154/101‑1 (MQ=1)                                                                                             GGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATC                          <  2:7358390/101‑1 (MQ=1)                                                                                             GGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATC                          <  2:3778070/101‑1 (MQ=1)                                                                                              GGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCA                         <  1:3998006/101‑1 (MQ=1)                                                                                              GGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCA                         <  2:6609037/101‑1 (MQ=1)                                                                                              GGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCA                         <  1:174713/101‑1 (MQ=1)                                                                                               GGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCAC                        <  1:1405047/101‑1 (MQ=1)                                                                                                GCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACC                       <  1:5679867/101‑1 (MQ=1)                                                                                                  ggAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGGCAGGGATCCGAAGGTCGCCTTCTTCGGGATAACCCG                     >  2:449526/3‑101 (MQ=0)                                                                                                  ggAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCG                     <  2:2243939/99‑1 (MQ=1)                                                                                                  ggAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCG                     <  1:2442620/99‑1 (MQ=1)                                                                                                  ggAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGGCGCCTTCTTCGGGATCACCCc                     >  2:8748282/3‑100 (MQ=1)                                                                                                  ggAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAAACCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGGCGCCTTCTTCGGGATCACCCG                     >  2:7882979/3‑101 (MQ=0)                                                                                                   gAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGGTCACCCGC                    >  2:8301907/2‑101 (MQ=1)                                                                                                   gAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGC                    <  2:1918051/100‑1 (MQ=1)                                                                                                    AGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCT                   <  2:2044929/101‑1 (MQ=1)                                                                                                                                                                                                                           CCTGGGCGCTGCTGCTGATCTCGCTCAAGCTGCTCTGGGACCTTCTTCCCTGAGCCCCCCTGTCACCTTGCGGCAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCGGGTCGCC....................................................................................................  <  NC_014034/788116‑788000 ....................................................................................................GCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGTCGAGGTC  >  NC_014034/2330313‑2330412 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG