New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 788033	404 (0.920)	43 (0.100)	14/192	31.7	0.17	intergenic (+105/+31)	pntB/RCAP_rcc00717	pyridine nucleotide transhydrogenase subunit beta/hypothetical protein
	?	NC_014034	= 974303	22 (0.050)					intergenic (+183/+76)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

TTGGACCCCGTGACAGAGCCCCGCCGGAAACGGCGGGGTTTTTCATTTCGCCCCGGCTGTGCCGGGGCGACCCGCCGGGGGCTTCGCCCCCGGACCCCC....................................................................................................  >  NC_014034/787935‑788033 ...............................................................................................CCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCA.CGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTCCGGG  <  NC_014034/974303‑974205                                                                                                                                                                                                                  GTGACAGAGCCCCGCCGGAAACGGCGGGGGTTTTCATTTCGCCCCGGCTGTGCCGGGGCGACCCGCCGGGGGCCTCGCCCCCGGACCCCCCGGATATTTtc                                                                                           >  2:9111067/1‑99 (MQ=255)                                                                     ccCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTT                                <  1:5275024/99‑1 (MQ=0)                                                                     GACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTT                                >  2:2447229/1‑101 (MQ=0)                                                                          GCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTG                           <  1:1523064/101‑1 (MQ=0)                                                                           CCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGG                          <  1:1469946/101‑1 (MQ=0)                                                                           CCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGG                          <  1:5907567/101‑1 (MQ=0)                                                                            CGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGT                         <  2:1198724/101‑1 (MQ=0)                                                                            CGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGT                         <  2:3520867/101‑1 (MQ=0)                                                                             GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTG                        <  2:3492589/101‑1 (MQ=0)                                                                             GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTG                        <  2:4309886/101‑1 (MQ=0)                                                                             GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTG                        >  1:4086095/1‑101 (MQ=0)                                                                              GGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGC                       >  1:872865/1‑101 (MQ=0)                                                                              GGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGC                       >  1:7131564/1‑101 (MQ=0)                                                                               GGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCA                      <  2:4384728/101‑1 (MQ=0)                                                                               GGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCA                      <  2:5721953/101‑1 (MQ=0)                                                                                 GCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAA                    >  2:6308385/1‑101 (MQ=0)                                                                                   tcCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATA                  <  1:5665531/99‑1 (MQ=0)                                                                                   ccCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATA                  <  1:6618441/99‑1 (MQ=0)                                                                                    cCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTAAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATAC                 <  1:8430377/100‑1 (MQ=0)                                                                                     ccCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACG                <  1:4081194/99‑1 (MQ=0)                                                                                      GCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGC               <  1:2085746/101‑1 (MQ=0)                                                                                      GCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGC               >  2:2323667/1‑101 (MQ=0)                                                                                      GCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGC               >  1:727450/1‑101 (MQ=0)                                                                                        CCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTG             >  2:313528/1‑101 (MQ=0)                                                                                          CCGGACCCCGGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGG           <  1:1339272/101‑1 (MQ=0)                                                                                          CCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGG           >  2:3485095/1‑101 (MQ=0)                                                                                          CCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGG           >  2:7756647/1‑101 (MQ=0)                                                                                          CCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGG           >  2:4896782/1‑101 (MQ=0)                                                                                           CGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGG          >  1:6841177/1‑101 (MQ=0)                                                                                            GGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGG         >  1:6143522/1‑101 (MQ=0)                                                                                            GGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGG         >  1:1725350/1‑101 (MQ=0)                                                                                             GACCCCGGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGG        <  1:2323734/101‑1 (MQ=0)                                                                                             GACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGG        >  1:4571081/1‑101 (MQ=0)                                                                                             GACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGG        >  1:2358036/1‑101 (MQ=0)                                                                                             GACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGG        >  2:4873486/1‑101 (MQ=0)                                                                                              ACCCCGGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGT       <  2:1725297/101‑1 (MQ=0)                                                                                              ACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGc       >  2:8972899/1‑100 (MQ=0)                                                                                               CCCCGGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTC      <  1:715269/101‑1 (MQ=0)                                                                                               CCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTC      <  1:4545441/101‑1 (MQ=0)                                                                                               CCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTC      <  2:6884226/101‑1 (MQ=0)                                                                                               CCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTC      <  1:4832796/101‑1 (MQ=0)                                                                                               CCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTC      <  2:7845050/101‑1 (MQ=0)                                                                                               CCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTC      <  1:7113758/101‑1 (MQ=0)                                                                                               CCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTC      >  1:6958062/1‑101 (MQ=0)                                                                                                                                                                                                         TTGGACCCCGTGACAGAGCCCCGCCGGAAACGGCGGGGTTTTTCATTTCGCCCCGGCTGTGCCGGGGCGACCCGCCGGGGGCTTCGCCCCCGGACCCCC....................................................................................................  >  NC_014034/787935‑788033 ...............................................................................................CCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCA.CGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTCCGGG  <  NC_014034/974303‑974205 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 25 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG