New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	900803 =	165 (0.370)	58 (0.130)	3/196	40.9	0.19	intergenic (‑132/‑155)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
	?	NC_014034	2185834 =	335 (0.730)					intergenic (+107/‑398)	mtlK/RCAP_rcc02028	mannitol 2‑dehydrogenase/FeoA family protein
Rejected: Position hash score below cutoff.

TTGGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGG.....................  <  NC_014034/900904‑900803 ....................................................................................................GGGGGCTCCG.CCCCGCACCCCC  >  NC_014034/2185834‑2185853                                                                                                                               GGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACGCGCGGGG                      >  2:4871506/1‑101 (MQ=1)   GGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGG                      <  1:1421921/101‑1 (MQ=1)   GGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGG                      <  1:2862377/101‑1 (MQ=1)   GGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGG                      >  1:8365763/1‑101 (MQ=1)     CGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGG                    >  2:7138228/1‑101 (MQ=1)       CCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGctc                  >  1:868656/1‑98 (MQ=1)       CCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGctc                  >  1:7502822/1‑98 (MQ=1)       CCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGCGGGGgc                  >  2:4596769/1‑99 (MQ=14)        cgcccCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGctcc                 <  2:7365583/96‑5 (MQ=1)        CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGctcc                 <  2:8835104/101‑5 (MQ=1)        CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGctcc                 <  2:2081169/101‑5 (MQ=1)        CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGctcc                 <  2:1739978/101‑5 (MQ=1)        CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGctcc                 <  2:1606131/101‑5 (MQ=1)        CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGctcc                 >  1:5703813/1‑97 (MQ=1)        CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCCGGGGGgcg                 >  2:4871896/1‑98 (MQ=14)         cACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG               <  2:3535193/100‑1 (MQ=1)         GACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGctccc                >  2:4187362/1‑96 (MQ=1)         GACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGccccg                >  1:7856191/1‑96 (MQ=1)         GACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCCGGGGGggcg                >  2:5455014/1‑97 (MQ=2)         GACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG               >  2:8147701/1‑101 (MQ=1)         GACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG               <  2:5879499/101‑1 (MQ=1)         GACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG               <  1:2418714/101‑1 (MQ=1)         GACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG               >  1:4862882/1‑101 (MQ=1)         GACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG               <  2:6334487/101‑1 (MQ=1)           CTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCCGGGGG.TCCG.CC            >  2:8023142/1‑101 (MQ=0)           CTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CC            >  2:3937459/1‑101 (MQ=1)           CTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CC            <  1:5342703/101‑1 (MQ=1)           CTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CC            >  1:6367715/1‑101 (MQ=1)           CTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CC            <  1:2066644/101‑1 (MQ=1)            TCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCC           >  1:8643106/1‑101 (MQ=1)             CTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGACCGGGGCGACCCGC.GGGGGCTCCG.CCCC          >  1:2289067/1‑101 (MQ=1)              TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGG.TCCG.CCCCc         >  1:7926344/1‑100 (MQ=1)              TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCc         <  2:7085448/101‑2 (MQ=1)              TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCc         <  2:4503272/101‑2 (MQ=1)              TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCc         <  2:4473312/101‑2 (MQ=1)              TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCc         >  1:3855884/1‑100 (MQ=1)              TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCc         <  1:4519096/101‑2 (MQ=1)              TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCc         <  1:8778497/101‑2 (MQ=1)               AGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCcg        <  1:3322424/101‑3 (MQ=11)               AGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCcg        >  2:1628643/1‑99 (MQ=11)                GCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCcgc       <  2:7562816/101‑4 (MQ=31)                GCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCcgc       <  1:2574215/101‑4 (MQ=31)                GCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCcgc       <  2:7701646/101‑4 (MQ=31)                GCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCcgc       <  2:6730690/101‑4 (MQ=31)                 CCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCcgcc      >  2:6861146/1‑97 (MQ=14)                 CCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCcgca      <  2:4741504/101‑5 (MQ=32)                  CCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCG.CCCCcgcac     <  1:7262662/101‑6 (MQ=33)                   CAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCGCCCCCGCACC     <  2:657671/101‑1 (MQ=34)                   CAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCGCCCCCGCACC     <  2:1917355/101‑1 (MQ=34)                    AAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCGCCCCCGCACCC    <  1:8776875/101‑1 (MQ=34)                     AGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGG.TCCGCCCCCGCACCCC   >  1:8518260/1‑101 (MQ=21)                     AGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGG.TCCGCCCCCGCACCCC   >  2:8438504/1‑101 (MQ=21)                     AGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCGCCCCCGCACCCC   >  1:7249450/1‑101 (MQ=34)                     AGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCGCCCCCGCACCCC   >  1:9199530/1‑101 (MQ=34)                      GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCCG.CCCCGCACCCCC  >  2:3666943/1‑101 (MQ=9)                      GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCGCCCCCGCACCCCC  >  2:7282371/1‑101 (MQ=34)                      GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCGCCCCCGCACCCCC  <  2:6968161/101‑1 (MQ=34)                      GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGC.GGGGGCTCCGCCCCCGCACCCCC  <  2:1271103/101‑1 (MQ=34)                                                                                                                             TTGGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGG.....................  <  NC_014034/900904‑900803 ....................................................................................................GGGGGCTCCG.CCCCGCACCCCC  >  NC_014034/2185834‑2185853 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG