New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 974307	22 (0.060)	26 (0.070)	11/174	31.9	0.14	intergenic (+187/+72)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
	?	NC_014034	2577280 =	308 (0.670)					intergenic (+202/‑227)	fdx/purU	ferredoxin VI/formyltetrahydrofolate deformylase
Rejected: Position hash score below cutoff.

TCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG...................................................................................................  >  NC_014034/974199‑974307 .................................................................................................AAATATCCCGGGGGTCCGGGGCGGAGCCCCCGGCGGGTCGCCGGGGCGAAGCCGCGGCGAAATCCCGGCCCCGGCAAGCGCCTGGGCGGGAAGATCGCGCGCCCCGGAGCAA  >  NC_014034/2577280‑2577378                                                                                                                                                                                                                             GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGG                                                                                                    >  2:7845050/1‑101 (MQ=0)           GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGG                                                                                                    >  2:6884226/1‑101 (MQ=0)           GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGG                                                                                                    >  1:7113758/1‑101 (MQ=0)           GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGG                                                                                                    <  1:6958062/101‑1 (MQ=0)           GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGG                                                                                                    >  1:4545441/1‑101 (MQ=0)           GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGG                                                                                                    >  1:4832796/1‑101 (MQ=0)           GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCCGGGG                                                                                                    >  1:715269/1‑101 (MQ=0)            gCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGT                                                                                                   <  2:8972899/100‑1 (MQ=0)            ACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCCGGGGT                                                                                                   >  2:1725297/1‑101 (MQ=0)             CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTC                                                                                                  <  1:4571081/101‑1 (MQ=0)             CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTC                                                                                                  <  1:2358036/101‑1 (MQ=0)             CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTC                                                                                                  <  2:4873486/101‑1 (MQ=0)             CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCCGGGGTC                                                                                                  >  1:2323734/1‑101 (MQ=0)              CCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCC                                                                                                 <  1:6143522/101‑1 (MQ=0)              CCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCC                                                                                                 <  1:1725350/101‑1 (MQ=0)               CCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCG                                                                                                <  1:6841177/101‑1 (MQ=0)                CCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGG                                                                                               <  2:7756647/101‑1 (MQ=0)                CCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGG                                                                                               <  2:4896782/101‑1 (MQ=0)                CCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGG                                                                                               <  2:3485095/101‑1 (MQ=0)                CCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCCGGGGTCCGG                                                                                               >  1:1339272/1‑101 (MQ=0)                  CAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGG                                                                                             <  2:313528/101‑1 (MQ=0)                    GCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGgc                                                                                           <  2:2323667/101‑3 (MQ=0)                    GCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGgc                                                                                           <  1:727450/101‑3 (MQ=0)                    GCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGGCCGGGGgc                                                                                           >  1:2085746/1‑99 (MQ=0)                     CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGGG                                                                                          >  1:4081194/1‑101 (MQ=0)                       TATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGgcggg                                                                                        >  1:6618441/1‑96 (MQ=0)                                                                                                                                                                                                                   TCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG...................................................................................................  >  NC_014034/974199‑974307 .................................................................................................AAATATCCCGGGGGTCCGGGGCGGAGCCCCCGGCGGGTCGCCGGGGCGAAGCCGCGGCGAAATCCCGGCCCCGGCAAGCGCCTGGGCGGGAAGATCGCGCGCCCCGGAGCAA  >  NC_014034/2577280‑2577378 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG