New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 974307	22 (0.050)	28 (0.060)	14/190	31.5	0.09	intergenic (+187/+72)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
	?	NC_014034	2714722 =	542 (1.180)					intergenic (‑51/+28)	dht/amaB	dihydropyrimidinase/N‑carbamoyl‑L‑amino acid amidohydrolase
Rejected: Position hash score below cutoff.

CCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG....................................................................................................  >  NC_014034/974204‑974307 ....................................................................................................CGGGGGTCCGGGGGCTGCGCCCCCGGCGCGCGGTCAGTCTACGACGACGGCGGTTTCCAGAACCGCATGCAAAAGCACATCCGCCCCCGCCGCCGCCCATTCGGG  >  NC_014034/2714722‑2714821                                                                                                                                                                                                                    GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGG                                                                                                     >  2:7845050/1‑101 (MQ=0)      GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGG                                                                                                     >  2:6884226/1‑101 (MQ=0)      GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGG                                                                                                     >  1:7113758/1‑101 (MQ=0)      GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGG                                                                                                     <  1:6958062/101‑1 (MQ=0)      GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGG                                                                                                     >  1:4545441/1‑101 (MQ=0)      GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGG                                                                                                     >  1:4832796/1‑101 (MQ=0)      GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCCGGGG                                                                                                     >  1:715269/1‑101 (MQ=0)       gCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGT                                                                                                    <  2:8972899/100‑1 (MQ=0)       ACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCCGGGGT                                                                                                    >  2:1725297/1‑101 (MQ=0)        CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTC                                                                                                   <  1:4571081/101‑1 (MQ=0)        CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTC                                                                                                   <  1:2358036/101‑1 (MQ=0)        CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTC                                                                                                   <  2:4873486/101‑1 (MQ=0)        CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCCGGGGTC                                                                                                   >  1:2323734/1‑101 (MQ=0)         CCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCC                                                                                                  <  1:6143522/101‑1 (MQ=0)         CCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCC                                                                                                  <  1:1725350/101‑1 (MQ=0)          CCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCG                                                                                                 <  1:6841177/101‑1 (MQ=0)           CCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGG                                                                                                <  2:7756647/101‑1 (MQ=0)           CCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGG                                                                                                <  2:4896782/101‑1 (MQ=0)           CCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGG                                                                                                <  2:3485095/101‑1 (MQ=0)           CCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCCGGGGTCCGG                                                                                                >  1:1339272/1‑101 (MQ=0)             CAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGG                                                                                              <  2:313528/101‑1 (MQ=0)               GCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGC                                                                                            <  2:2323667/101‑1 (MQ=0)               GCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGC                                                                                            <  1:727450/101‑1 (MQ=0)               GCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGGCCGGGGGC                                                                                            >  1:2085746/1‑101 (MQ=0)                CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGgg                                                                                           >  1:4081194/1‑99 (MQ=0)                 GTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAATATCCCGGGGGTCCGGGGGCgg                                                                                          >  1:8430377/1‑99 (MQ=0)                  TATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCggg                                                                                         >  1:6618441/1‑98 (MQ=0)                    TTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCggagc                                                                                       <  2:6308385/101‑6 (MQ=0)                                                                                                                                                                                                               CCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG....................................................................................................  >  NC_014034/974204‑974307 ....................................................................................................CGGGGGTCCGGGGGCTGCGCCCCCGGCGCGCGGTCAGTCTACGACGACGGCGGTTTCCAGAACCGCATGCAAAAGCACATCCGCCCCCGCCGCCGCCCATTCGGG  >  NC_014034/2714722‑2714821 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG