New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	974316 =	23 (0.050)	32 (0.070)	19/190	28.6	0.45	intergenic (+196/+63)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
	?	NC_014034	= 2185973	54 (0.120)					intergenic (+246/‑259)	mtlK/RCAP_rcc02028	mannitol 2‑dehydrogenase/FeoA family protein
Rejected: Position hash score below cutoff.

CTCTGGGTGATCGCGCGCTCGAACCTGATCCTGTTCGGCTGAGAACCGGCCGTTGCGGCGGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGCT.....................................................................................................  <  NC_014034/974420‑974316 ....................................................................................................GGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAA.GGGGCGGTTCGGCGTTTCTTGTGCCATCAAAAACAAGGCCTTCGGGGCAAGCCGCTGCTTT  <  NC_014034/2185973‑2185874                                                                                                                                                                                                                        GATCGCGCGCTCGAACCTGATCCTGTTCGGCTGAGAACCGGCCGTTGCGGCCGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGCCCCGC                                                                                                   >  1:1441598/1‑101 (MQ=0)           TCGCGCGCTCGAACCTGATCCTGTTCGGCTGAGAACCGGCCGTTGCGGCCGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGGTCCcgcc                                                                                                 >  2:8487879/1‑97 (MQ=0)            CGCGCGCTCGAACCTGATCCTGTTCGGCTGAGAACCGGCCGTTGCGGCCGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGGTCCGCCCC                                                                                                >  1:1139876/1‑101 (MQ=0)            CGCGCGCTCGAACCTGATCCTGTTCGGCTGAGAACCGGCCGTTGCGGCCGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGCTCCGGCCC                                                                                                >  2:8050750/1‑101 (MQ=0)               GCGCTCGAACCTGATCCTGTTCGGCTGAGAACCGGCCGTTGCGGCCGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGGTCCGCCCCCcg                                                                                             >  1:9160992/1‑99 (MQ=0)                  CTCGAACCTGATCCTGTTCGGCTGAGAACCGGCCGTTGCGGCCGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCCGGGGCTCCGCCCCCGGGCC                                                                                          >  2:3592398/1‑101 (MQ=0)                      AACCTGATCCTGTTCGGCTGAGAACCGGCCGTTGCGGCCGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGCTCCCCCCCCCGACCCCCG                                                                                      >  2:8625196/1‑101 (MQ=0)                          TGATCCTGTTCGGCTGAGAACCGGCCGTTGCGGCCGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGAT                                                                                  >  1:7153873/1‑101 (MQ=1)                            ATCCTGTTCGGCTGAGAACCGGCCGTTGCGGCCGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATAT                                                                                >  1:7835866/1‑101 (MQ=1)                               CTGTTCGGCTGAGAACCGGCCGTTGCGGCCGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTG                                                                             >  2:5034127/1‑101 (MQ=1)                               CTGTTCGGCTGAGAACCGGCCGTTGCGGCCGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCCGACCCCCGGGATATTTG                                                                             >  2:7370446/1‑101 (MQ=0)                                 GTTCGGCTGAGAACCGGCCGTTGCGGCCGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGtc                                                                           >  1:8132093/1‑99 (MQ=0)                                                                                     CGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCT                      >  2:8791558/1‑101 (MQ=0)                                                                                     CGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCT                      >  2:3503748/1‑101 (MQ=0)                                                                                      GAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTT                     >  2:2762612/1‑101 (MQ=0)                                                                                           GACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGG                >  2:6479185/1‑101 (MQ=0)                                                                                           GACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGG                >  1:7356805/1‑101 (MQ=0)                                                                                             CCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCA              <  2:1883161/101‑1 (MQ=0)                                                                                                GCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGC           <  2:6016404/101‑1 (MQ=0)                                                                                                 CCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCC          >  1:8015490/1‑101 (MQ=0)                                                                                                  CGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCG         >  2:1656953/1‑101 (MQ=0)                                                                                                  CGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCG         >  1:8844289/1‑101 (MQ=0)                                                                                                  CGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCG         >  2:472920/1‑101 (MQ=0)                                                                                                  CGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCG         >  2:8389981/1‑101 (MQ=0)                                                                                                   GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGC        >  1:1773115/1‑101 (MQ=0)                                                                                                   GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGC        >  1:587127/1‑101 (MQ=0)                                                                                                   GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGC        >  1:7532949/1‑101 (MQ=0)                                                                                                   GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGC        >  2:6178695/1‑101 (MQ=0)                                                                                                   GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGC        >  2:5437737/1‑101 (MQ=0)                                                                                                   GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGC        >  2:2869756/1‑101 (MQ=0)                                                                                                    GGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGCT       >  2:753010/1‑101 (MQ=0)                                                                                                    GGGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAAGGGGGCGGTTCGGCGTTTCTTGTGCCATC.AAAACAAGGCCTTCGGGGCAAGCCGCT       <  1:5106648/101‑1 (MQ=0)                                                                                                                                                                                                                CTCTGGGTGATCGCGCGCTCGAACCTGATCCTGTTCGGCTGAGAACCGGCCGTTGCGGCGGGGGTATTTCGCCTCGGCTGTCGCCGAGGCGACCCGCCGGGGGCT.....................................................................................................  <  NC_014034/974420‑974316 ....................................................................................................GGGCTCCGCCCCCGGACCCCCGGGATATTTGAGCCAAGGTGAAA.GGGGCGGTTCGGCGTTTCTTGTGCCATCAAAAACAAGGCCTTCGGGGCAAGCCGCTGCTTT  <  NC_014034/2185973‑2185874 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG