BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	392448 =	219 (0.500)	98 (0.220)	20/192	28.3	0.47	intergenic (‑96/+47)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
*	?	NC_014034	= 1253888	NA (NA)	98 (0.220)	20/192	28.3	0.47	intergenic (+46/+45)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
Rejected: Position hash score below cutoff.

Only 100 of 247 total aligned reads displayed.


GCCATCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTC  >  NC_014034/392348‑392548


 ccATCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.g                                                                                                          <  2:6048629/101‑1 (MQ=255)


  cATCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATTCCGGGCG.GCC.gg                                                                                                         >  1:8762762/1‑101 (MQ=255)


   aTCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.ggg                                                                                                        >  2:3475959/1‑101 (MQ=255)


   aTCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.ggg                                                                                                        >  2:5640862/1‑101 (MQ=255)


   aTCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.ggg                                                                                                        >  2:7711927/1‑101 (MQ=255)


   aTCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.ggg                                                                                                        >  1:7151841/1‑101 (MQ=255)


      ggAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGc                                                                                                     >  2:1124609/1‑101 (MQ=255)


       gAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCg                                                                                                    <  1:7818622/101‑1 (MQ=255)


       gAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCg                                                                                                    <  1:3690606/101‑1 (MQ=255)


       gAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.GCC.GGGGGCg                                                                                                    >  2:1755134/1‑101 (MQ=255)


        aaaTCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCgg                                                                                                   <  1:4409161/101‑1 (MQ=255)


         aaTCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATCTCCCGGGGG.TCC.GGGGGCGG.a                                                                                                 >  2:5326656/1‑101 (MQ=255)


          aTCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.Ag                                                                                                <  2:1635334/101‑1 (MQ=255)


            cccTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.cc                                                                                             >  1:3740216/1‑101 (MQ=255)


               ccctTGTCCCCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATACCCCGGGGG.TCC.GGGGGCGG.AG.ccccc                                                                                          <  2:7903593/100‑1 (MQ=255)


                  ttGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCc.ggg                                                                                      >  2:1385111/1‑100 (MQ=255)


                   tGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCc.ggcg                                                                                     >  1:1873577/1‑101 (MQ=255)


                     tCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCggg                                                                                   >  2:8990984/1‑101 (MQ=255)


                     tCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCggg                                                                                   >  1:5582565/1‑101 (MQ=255)


                       aCCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCggggg                                                                                 >  2:3990289/1‑99 (MQ=255)


                       aCCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCggggg                                                                                 >  1:4899311/1‑99 (MQ=255)


                        ccGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCgggggg                                                                                >  1:8175667/1‑98 (MQ=255)


                            gcAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGcggc                                                                            >  1:1423621/1‑98 (MQ=255)


                            caaaGACGAGGCGGCCCAACCCGGAGGC.A.CAATGGCGGGCCATTTCATCTTGCCTCAAATACCCCGGGGG.TCG.GGGGGGGG.AG.CCCCC.GGCGGGTCGCCTc                                                                            <  2:1698013/99‑1 (MQ=18)


                             cAAGACTAGGCGGCCCAAACGGGGGGG.A.CAATGGCAGCCCATTTCATCTTGCCTCAAATACCCGGGGGG.TCG.GGGGGCGG.AC.CCCCC.GGCGGGTCGCCTCg                                                                           <  1:5667728/101‑1 (MQ=21)


                             aaaGACTA.GGGGCCCAAACCGGGGGGAA.AAAGGGCGGGCCTTTTCATCTTGCCTAAAATACCCGGGGGG.CCG.GGGGGCGG.AC.CCCCC.GGCGGGTCGCCTCg                                                                           <  2:2259951/100‑1 (MQ=12)


                              aaGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCgggggggcccgg                                                                          >  2:2710142/1‑92 (MQ=255)


                              aaGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCgggggggcccgg                                                                          >  2:4053620/1‑92 (MQ=255)


                              aaGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCgggggggccccg                                                                          >  2:511803/1‑92 (MQ=255)


                              aaGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCgggccgg                                                                          >  2:8889531/1‑95 (MQ=255)


                               agccTATGCGGCCCAACCCGGAGGG.A.CAATGGCAGGCCTTTTCATCTTGCCTCAAATACCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGgc                                                                         <  2:3921834/98‑1 (MQ=25)


                                  cTAGGCGGCCCAACCCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCa                                                                      <  2:7104469/101‑1 (MQ=255)


                                  cTAGGCGCCCCAACCCGGAGGG.A.AAAGGGCAGGCCATTTCATCTTGCCTAAAATACCCGGGGGG.CCC.GGGGGCGG.AC.CCCCC.GGCGGGTCGCCTCGGCGCa                                                                      <  1:2578095/101‑1 (MQ=18)


                                  cTAGGCCGCCAAAACGGGGGGA.A.CAAGGGCAGGCCTTTTCTTCTTCCCTAAAATCCCCGGGGGG.CCG.GGGGGGGG.CC.CCCCC.GGCGGGTCGCCTCGGCGCa                                                                      <  1:6595262/101‑1 (MQ=12)


                                   tATGCGGCCCAACCCGGAGGA.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAg                                                                     <  2:1564954/101‑1 (MQ=255)


                                   tATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGGCGCGgcgcgg                                                                     >  1:5301588/1‑99 (MQ=21)


                                   tATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGCCCCGgcggcg                                                                     >  2:2023495/1‑98 (MQ=25)


                                    aTGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGTGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGCCCCGGCGCGGc                                                                    >  1:135997/1‑101 (MQ=25)


                                    aTGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGGCGCGGCGCCGc                                                                    >  2:6855400/1‑101 (MQ=21)


                                      gCGCCCCAAACCGGGGGG.AGCAGGGGACGCCCTTTTCTTCTGGCCT.AAACTGCCGGGGGG.CCCGGGGGGGGG.AC.CCCCG.GGCGGGTCGCCTCGGCGCAGcc                                                                   <  1:7798048/101‑1 (MQ=255)


                                             aagccGGAGGG.A.CAGGGGCAGGCCATTTCATCTTGCCTAAAATACCCCGGGGG.TCC.GGGGGCGG.GG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGaa                                                           <  2:9023293/98‑1 (MQ=21)


                                                cgggAGGG.A.CAAGGGCAGGCCTTTTCATCTTGCCTCAAATACCCGGGGGG.TCC.GGGGGGGG.GC.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATc                                                        <  2:8165146/99‑1 (MQ=21)


                                                 cGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGCCCCGGCGCCGGCGCGGCgggaaaa                                                       >  1:4065198/1‑95 (MQ=18)


                                                  ggAGGG.A.CAATGGCGGGCCCTTTCATCTTGCCTCAAATACCCGGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCAc                                                      <  2:5301917/101‑1 (MQ=25)


                                                       g.A.CAAGGGCGGGCCTTTTCATCTTGCCTCAAATACCCCGGGGG.TCG.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGcc                                                 <  2:5863984/101‑1 (MQ=25)


                                                             aTGGCAGGCCTTTTCATCTTGCCTAAAATACCCGGGGGG.CCG.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.Ac                                            <  1:5927864/101‑1 (MQ=25)


                                                              gggCAGGCCATTTCATCTGGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACt                                           <  2:7435824/100‑1 (MQ=255)


                                                                gCAGGCCTTTTCATCTTGCCTCAAATCTCCCGGGGG.TCG.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTtc                                         <  2:8400600/101‑1 (MQ=255)


                                                                gCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGGCTCGGCGCCGCCGCGGGGGAAACACCTGCCGa.aactc                                         >  1:7480998/1‑97 (MQ=17)


                                                                gCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGCCGCCGCGCGGCCGCGGCGGAAACACCTGCCCA.ACTtc                                         >  2:4407774/1‑101 (MQ=17)


                                                                 cAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGCCTCCGCGGCGCCGCGGCGGAAACACTCGccccacctct                                         >  1:1211291/1‑93 (MQ=17)


                                                                     ccttttCATCTTCCCTCAAATACCCGGGGGG.CCC.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCca                                    <  1:6802069/98‑1 (MQ=25)


                                                                     ccATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGCCCCGGGGGCGCCGCGGCGGAAAAACATGCCCA.ACTTCTcccc                                    >  1:275036/1‑100 (MQ=14)


                                                                      cATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGGCCCGGCGGGGCCGCGGGGGGAACACCTTCCTC.ACTTCTccccc                                   >  1:9102018/1‑99 (MQ=2)


                                                                      cATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGGCGCCGCGGCGGCGAGGCGGCATCGGTTGCCGC.Acgactctccc                                   >  2:1863586/1‑92 (MQ=2)


                                                                      cATTTCACCTTCCCTAAAATACCCGGGGGG.TCC.GGGGGGGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCca.c                                  <  2:2470747/101‑1 (MQ=25)


                                                                       ttttCTTCTTGCC.GAAACTTCCCGGGGG.GGC.GGGGGGGG.CT.CCCCCGGGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCca.ca                                 <  2:4552203/100‑1 (MQ=16)


                                                                       ttttCATCTTGCCTCAAATATCCGGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCca.ca                                 <  1:3942032/100‑1 (MQ=255)


                                                                       attccttCTTGCCTCAAACCCCCGGGGGG.CCG.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCca.ca                                 <  2:7206017/95‑1 (MQ=25)


                                                                       aTTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGCCCCGGCGCGGCCCGGGCGGAAACAACTGCCGA.ACTTCTCCcc.ca                                 >  1:4205030/1‑101 (MQ=17)


                                                                        agtCATCGTGCCTCAAAGCTCCCGGGGG.TCG.GGGGGGGG.AG.CCCCC.GGCGGGTAGCCTCGGCGCAGCCGAGGCGAAATCCCTTGCCGA.ACTTCTCCCA.Caa                                <  2:4287731/99‑1 (MQ=25)


                                                                         ttCTTCTCGCCACAAAT.CCCCGGGGG.GCC.GGGGGGGG.GGCCCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.Caaa                               <  1:6927812/101‑1 (MQ=21)


                                                                          tcttttgcccTCAAATCCCCGGGGGG.CCG.GGGGGGGG.CC.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAAt                              <  1:3844449/93‑1 (MQ=21)


                                                                          tCATCTTGCCTCAAATATCCCGGGGG.TCG.GGGGGCGG.AC.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAAt                              <  2:8621340/101‑1 (MQ=255)


                                                                           cATCTTGCCTCAAATACCCCGGGGG.CCC.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATc                             <  1:4242194/101‑1 (MQ=255)


                                                                            aTCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGCCTCGGGGCCGCCCCGGGGGCAACACATTCCCA.ACTTCTccccccaaacc                             >  1:4571034/1‑93 (MQ=9)


                                                                            aTCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGGCTCGGCGCCGCCGAGGCGGAAAAACCTGCCGC.AAATCTccccccaaacc                             >  2:4614885/1‑93 (MQ=12)


                                                                             ctcgtccTCAAAATCCCCGGGGG.GCCGGGGGGCGG.CC.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATcc                            <  2:4841326/96‑1 (MQ=21)


                                                                              cTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGGCCCCGCGCCGCCGCGGCGGAAACACTTTCCCC.ACCTCTCCCA.Ccaaccacc                          >  2:6476973/1‑96 (MQ=9)


                                                                               ttGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGGCCCCGCGCAGCCGAGGGGGAATAACATGCCCG.ACTTTTCCCA.Ccaaaaccgc                         >  1:1014406/1‑95 (MQ=12)


                                                                                   cTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGCCCCGGCGCCGCCGCGGCGGAAACAACTGCCGC.ACTTCTCCCC.CCAAACCCgccgcc                     >  2:7078148/1‑101 (MQ=12)


                                                                                    caaaaatccccGGGGG.GCCGGGGGGGGG.CC.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATCCGgccgcc                     <  2:3058842/93‑1 (MQ=25)


                                                                                     cAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGCCCCGGCGGGGCCGAGGGGGAAACAACTGCCGA.ACATCTCCCC.CAAAAcccaccccccg                   >  1:2482461/1‑92 (MQ=9)


                                                                                     cAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGCCCCCGCGCCGCCGGGGCGGAAACACTTTCCGA.ACTTCTCCCC.CCAAACCCgccgcccg                   >  2:8379063/1‑99 (MQ=12)


                                                                                     cAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGCCCCGGCGCCGCCCCGGCGGAAACACCTTCCCC.ACATCTCCCC.CACAACCCgccccccc                   >  2:3214083/1‑99 (MQ=2)


                                                                                       aaatccccGGGGG.GCC.GGGGGGGGCAC.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATCCGGCCGCCGGt                  <  2:2174795/96‑1 (MQ=25)


                                                                                       aaTATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGCCCCGGCGCGGCCCGGGCGGAAACCCCTGCCGA.ACTTCTCCCC.CCAAACCCgccgcccggc                 >  1:3977659/1‑97 (MQ=12)


                                                                                       aaTATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGCCCCGGCGCCGCCCGGGCGGAAACAACTCCCGC.ACCTCTCCCC.CCAAACCCgccgcccggc                 >  2:3422246/1‑97 (MQ=9)


                                                                                        atatCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGGCCCGGCGGCGCCGCGGCGGAAAAACTTGCCCG.ACATCTCCCC.CCAAACCGCGCGCCGGGcc                >  2:6542973/1‑101 (MQ=9)


                                                                                         gtgccgggggg.CCG.GGGGGCGG.AC.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATCCGGCCGCCGGTccc               <  2:8228508/95‑1 (MQ=37)


                                                                                          atCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGTGCCCCGGGCCCGCCGGCGCGAAACTACATTTCGAGACTT.TCCCA.CAAAACCAgcccccccgcccc              >  1:8380315/1‑94 (MQ=2)


                                                                                          atCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGCCCCCGCGCGGCCGCGGCGGAATAACTTGCCCA.ACCTCTCCCC.CCAATACAGCCGCCggcgccc              >  2:776180/1‑96 (MQ=12)


                                                                                           tCCCGGGGG.TCG.GGGGGCGC.AC.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATCCGGCCGCCGGTCCcgc             <  2:4134883/101‑1 (MQ=255)


                                                                                           acccGGGGGCCCC.GGGGGGGG.AC.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATCCGGCCGCCGGTCCcg              <  1:7269218/100‑1 (MQ=37)


                                                                                              cGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGGCCCGGGGCCCCCGGGGGGGAAAAACCTGCCGC.CACTCTCCCACCAAACCGGGCCCCCGGCCCcccgc           >  2:5836494/1‑100 (MQ=2)


                                                                                              cGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGCCCCGGCGCCGCCGAGGCGGAAACACTTGCCGA.ACTTCTCCCA.CCAAACCGCCCGCCGGGCCcgcgcc          >  2:5559878/1‑99 (MQ=21)


                                                                                              cGGGGG.CCG.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATCCGGCCGCCGGTCCCGCGTc          <  2:8741426/101‑1 (MQ=255)


                                                                                               ggggg.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGCCCCGGCGCCGCCGAGGCGGAAACAATTGCCGA.ACATCTCCCC.CCAAACCCGCCCCCCGCCCcgcgccc         >  1:7024817/1‑98 (MQ=12)


                                                                                               ggggg.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGGCCCGGCGCCGCCGCGGGGGAAACACCTTCCGA.ACATCTCCCC.CAAACCCCCCCCCCggggccccgccc         >  1:6017760/1‑91 (MQ=9)


                                                                                               ggggg.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGCCCCGGGGCCGGCGAGGGGGAAACAATTGCCGG.ACCTCTCCCC.CAAAACCCGCCCCCCGGCCcccgccc         >  1:3196670/1‑98 (MQ=9)


                                                                                               ggggg.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGCCCCCGCGGGGCCCGGGCGGAAACACTTGCCGG.ACCTTTCCCC.CCAAACCCGGCGCCGGGCCCGCCTcc         >  1:9021482/1‑100 (MQ=9)


                                                                                                 ggg.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGGGCCTCGGGGCAGCCGAGGCGGAAACACTTTCCGC.ACTTCTTCCC.CACAACCCGCCGCCCGTCCCCCGTccca       >  2:6788004/1‑98 (MQ=16)


                                                                                                 ggg.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGCCCCGGCGCCGCCGCGGCGGAAACACCTGCCGC.ACTTCTCCCC.CCCAAACGGCCGCCCGGCCCCCGTccca       >  2:625863/1‑98 (MQ=12)


                                                                                                  gg.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGCCCCGGGGCGGCCCCGGCGGAAAAACTTTCCGC.ACCTCTCCCC.CCCAACCCGCCGCCCGGccccccgccaac      >  1:6285689/1‑92 (MQ=2)


                                                                                                   g.TCG.GGGGGGGG.CC.CCCCG.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGc     <  2:8843323/101‑1 (MQ=38)


                                                                                                   g.TCC.GGGGGCGG.AG.CCCCC.GGCGGGGCGGCCCCGCGCCGCCCCGGGGGAAACACTTGCCGC.ACCTCTCCCC.CCAAAACCGCCGCCGCGCCcgcgcccaaac     >  2:5124808/1‑94 (MQ=9)


                                                                                                      cc.GGGGGCGG.AG.CCCCC.GGCGGGGCGCCCCCGGGCGGCCCAGGGGGAAACACCTGCCGG.ACATCTCCCC.CCAAAACCGCCGCCCGGCCCGCCCCaaaacct   >  1:5160184/1‑97 (MQ=2)


                                                                                                       c.GGGGGGGG.CC.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTc  <  2:2422288/101‑1 (MQ=255)


                                                                                                       c.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTc  <  1:625873/101‑1 (MQ=255)


                                                                                                       c.GGGGGCGG.AG.CCCCC.GGCGGGGGGCCCCGGGGCGGCCGGGGGGGAAAAACCTGCCGG.ACCTCTCCCC.CCAAACCCGCCGCCCGGCCCCCGGCCAAGCCTc  >  1:7973529/1‑101 (MQ=2)


GCCATCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGG.A.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGG.AG.CCCCC.GGCGGGTCGCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGA.ACTTCTCCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTC  >  NC_014034/392348‑392548

Base quality scores:


ATCG

< 3 ≤


ATCG

< 15 ≤


ATCG

< 26 ≤


ATCG

< 34 ≤


ATCG

< 41 ≤


ATCG