BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 392462	218 (0.480)	62 (0.140)	4/198	40.0	0.28	intergenic (‑110/+33)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
*	?	NC_014034	1253896 =	94 (0.210)	62 (0.140)	4/198	40.0	0.28	intergenic (+54/+37)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
Rejected: Position hash score below cutoff.

Only 100 of 223 total aligned reads displayed.


CTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCC  >  NC_014034/392362‑392562


ctcctTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.cccc                                                                                                           >  2:3941917/1‑101 (MQ=255)


 tcctTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.ccccc                                                                                                          >  1:6382756/1‑101 (MQ=255)


 tcctTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.ccccc                                                                                                          >  1:4522961/1‑101 (MQ=255)


  cctTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCc..g                                                                                                       >  1:6636710/1‑101 (MQ=255)


      gTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCc..ggcgg                                                                                                   >  1:1920428/1‑101 (MQ=255)


       tCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCggg                                                                                                  >  2:8990984/1‑101 (MQ=255)


       tCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCggg                                                                                                  >  1:5582565/1‑101 (MQ=255)


         aCCGCGCAAGACTATGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGCTG.CCCCC..GGCggggg                                                                                                >  2:1599363/1‑99 (MQ=255)


             cgcAAAACTATGCGGGCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCgggggggcg                                                                                            >  1:8843729/1‑95 (MQ=25)


               cAAGACTATGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCgggggggctcc                                                                                          >  2:2553059/1‑93 (MQ=255)


               cAAGACTATGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCgggggggccgc                                                                                          >  1:8716194/1‑93 (MQ=255)


               cAAGACTAGGCGGCCCAAACGGGGGGGA.CAATGGCAGCCCATTTCATCTTGCCTCAAATACCCGGGGGG.TCG.GGGGGCGGAC.CCCCC..GGCGGGTC.GCCTCg                                                                                         <  1:5667728/101‑1 (MQ=21)


                    cTATGCGGCCCAACCGGGAGGGA.CAAGGGCAGGCCATTTCATCTTGCCTCAAATACCCCGGGGG.TCG.GGGGGCGGAC.CCCCC..GGCGGGTC.GCCTCGGCGCa                                                                                    <  2:5441143/101‑1 (MQ=21)


                      aTGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGTGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GCCCCGGCGCGGc                                                                                  >  1:135997/1‑101 (MQ=25)


                           gCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GGCGCGGCGCGGCCggcg                                                                             >  2:4305050/1‑98 (MQ=21)


                               aagccGGAGGGA.CAGGGGCAGGCCATTTCATCTTGCCTAAAATACCCCGGGGG.TCC.GGGGGCGGGG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGaa                                                                         <  2:9023293/98‑1 (MQ=21)


                               aagccGGACGGA.CAATGGCGGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGaa                                                                         <  2:4250640/98‑1 (MQ=255)


                                acccGGGGGGC.CAAGGCCAGGCCTTTTCATCTGGCCTAAAATCCCCGGGGGG.TCG.GGGGGGGGAC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGaaa                                                                        <  1:8263883/99‑1 (MQ=16)


                                  ccGGGGGGACCAATGGC.GGGCTTTTCATTTTTCCCTAAAATCCCCGGGGG.GCC.GGGGGGGGGGCCCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAAt                                                                       <  2:715467/101‑1 (MQ=9)


                                   cGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GCCCCGGCGCCGGCGCGGCgggaaaa                                                                     >  1:4065198/1‑95 (MQ=18)


                                    ggAGGGA.CAATGGCGGGCCCTTTCATCTTGCCTCAAATACCCGGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCAc                                                                    <  2:5301917/101‑1 (MQ=25)


                                     gAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GCCCCCGCGCCGCCGCGGCGGAAACACt                                                                   >  2:3211888/1‑101 (MQ=18)


                                       gggA.CAGTGGCAGGCCTTTTCATCTTGCCTCAAATACCCGGGGGG.CCG.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTg                                                                 <  2:8359206/101‑1 (MQ=25)


                                       gggA.CAAGGGCAGGCCATTTCATCTTGCCTAAAATATCCGGGGGG.TCG.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTg                                                                 <  2:5225772/101‑1 (MQ=25)


                                           ccAAGGGCAGGCCATTTCATCTTGCCTTGAATACCCGGGGGG.TCC.GGGGGGGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCg                                                              <  2:1688429/100‑1 (MQ=25)


                                            cAAGGGCAGGCCATTTCATCTTGCCTCAAATACCCCGGGGG.TCG.GGGGGCGGAC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGa                                                             <  2:6553401/101‑1 (MQ=37)


                                              aTGGCAGGCCTTTTCATCTTGCCTAAAATACCCGGGGGG.CCG.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAAc                                                           <  1:5927864/101‑1 (MQ=25)


                                                ggCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GCCCCGGCGCCGCCGCGGCGGAAACACCTGACGCAcct                                                         >  1:8012219/1‑99 (MQ=17)


                                                 gCAGGCCTTTTCATCTTGCCTCAAATCTCCCGGGGG.TCG.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTtc                                                        <  2:8400600/101‑1 (MQ=255)


                                                 gCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GGCTCGGCGCCGCCGCGGGGGAAACACCTGCCGaaactc                                                        >  1:7480998/1‑97 (MQ=17)


                                                   aGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GCCCCGGCGCGGCCCAGGGGAAAACACCTGCCGCAcacctc                                                      >  2:2091318/1‑96 (MQ=17)


                                                    ggCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.cc                                                    <  2:5124063/101‑1 (MQ=255)


                                                    ggCCATTTCATCTTGCCTAAAATACCCGGGGGG.TCG.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.cc                                                    <  1:6855672/101‑1 (MQ=25)


                                                     gCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GCCCCGGGGCCGCCGCGGCGGAAAAACATGGCGCACATCT.ccc                                                   >  2:7238588/1‑101 (MQ=14)


                                                      ccATTTCATCTTGCCTCAAATATCCCGGGGG.TCG.GGGGGCGGGC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCca                                                  <  2:8186099/101‑1 (MQ=255)


                                                       cttttCATCTGGCCTCAAATACCCGGGGGG.CCG.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCca.c                                                <  1:2710224/99‑1 (MQ=25)


                                                       ctttccATCTTGCCTAAAATGCCCGGGGGG.TCG.GGGGGGGGGC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCca.c                                                <  1:4178279/96‑1 (MQ=21)


                                                       cATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GGCCCGGCGGGGCCGCGGGGGGAACACCTTCCTCACTTCT.ccccc                                                 >  1:9102018/1‑99 (MQ=2)


                                                        ttttCTTCTTGCCTCAAATACCCCGGGGG.TCG.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCca.ca                                               <  1:1391680/100‑1 (MQ=255)


                                                        ttttCTTCTTGCC.GAAACTTCCCGGGGG.GGC.GGGGGGGGCT.CCCCCG.GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCca.ca                                               <  2:4552203/100‑1 (MQ=16)


                                                        ttttCATCTTGCCTCAAATATCCGGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCca.ca                                               <  1:3942032/100‑1 (MQ=255)


                                                         tttCATCTTGCCTCAATTATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.Caa                                              <  2:5764853/101‑1 (MQ=255)


                                                         tttCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GGCCCCGCGCCGCCGCGGGGGGAACACCTGCCCAACTTCT.tcccccc                                               >  1:6072578/1‑97 (MQ=9)


                                                          ttCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGCGGCCCCGGGGC.GCCCGGGCGGAAGCACTTCGCGAACTTCT.ccccccac                                              >  1:5316292/1‑96 (MQ=9)


                                                           tCATCTTGCCTCAAATATCCCGGGGG.TCG.GGGGGCGGAC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAAt                                            <  2:8621340/101‑1 (MQ=255)


                                                           tCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GGCCCGGCGCCGCCGGGGGGGAAACACATGCCCAACATCT.ccccccaca                                             >  1:3474199/1‑95 (MQ=9)


                                                           tCAGCTTGCCTCAAATACCCCGGGGG.CCC.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAAt                                            <  2:2795462/101‑1 (MQ=255)


                                                            cATCTTGCCTCAAATACCCCGGGGG.CCC.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATc                                           <  1:4242194/101‑1 (MQ=255)


                                                             aTCTTGCCTCAAATATCCCGGGGG.TCG.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATcc                                          <  2:8513068/101‑1 (MQ=255)


                                                             aTCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GGCTCGGCGCCGCCGCCGCGGAAACACCTTCCGCACCTCT.CCCA.CAAAAcc                                          >  2:1450600/1‑101 (MQ=12)


                                                             aTCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GGCTCGGCGCCGCCGAGGCGGAAAAACCTGCCGCAAATCT.ccccccaaacc                                           >  2:4614885/1‑93 (MQ=12)


                                                              ctcgtccTCAAAATCCCCGGGGG.GCCGGGGGGCGGCC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATcc                                          <  2:4841326/96‑1 (MQ=21)


                                                               cTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GGCCCCGCGCCGCCGCGGCGGAAACACTTTCCCCACCTCT.CCCA.Ccaaccacc                                        >  2:6476973/1‑96 (MQ=9)


                                                                ttcccTCAAATGCCCGGGGGG.CCC.GGGGGCGGAG.CCCCG..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGgc                                       <  2:5063183/98‑1 (MQ=25)


                                                                ttGCCTCAAATATCCCGTGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGgc                                       <  2:135997/101‑1 (MQ=255)


                                                                ttGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GGCCCCGCGCAGCCGAGGGGGAATAACATGCCCGACTTTT.CCCA.Ccaaaaccgc                                       >  1:1014406/1‑95 (MQ=12)


                                                                    cTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GCCCCGGCGCCGCCGCGGCGGAAACAACTGCCGCACTTCT.CCCC.CCAAACCCgccgcc                                   >  2:7078148/1‑101 (MQ=12)


                                                                    cTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GCCTCCGCGCCGCCCCGGCGGAAACACCTGCCGAAACTCT.CCCA.CAAAACCCgccccc                                   >  1:7949233/1‑101 (MQ=12)


                                                                     tgaaaTCTCCCGGGGG.CCC.GGGGGGGGAC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAACCCGGccgccg                                  <  2:5926624/99‑1 (MQ=37)


                                                                      cAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GCCCCGGCGGGGCCGAGGGGGAAACAACTGCCGAACATCT.CCCC.CAAAAcccaccccccg                                 >  1:2482461/1‑92 (MQ=9)


                                                                       aaaTATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GCCCCGGGGCCGCCGCGGGGGAAACACCTGCCCCACCTCT.CCCC.CAAAACCCCCCGCCggc                                >  1:4889732/1‑100 (MQ=9)


                                                                       aaaTATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GCCCCGGCGCCGCCCGGGCGGGAACACTTTCCGCACCTCT.CCCC.CCAAACCCgccgcccgg                                >  2:1956511/1‑98 (MQ=9)


                                                                        aattggtgggggg.TGG.GGGGGGGCAC.CCCCG..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTc                               <  1:9040629/93‑1 (MQ=25)


                                                                        aaTATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GGCCCGGCGCGGGCGCGGCGGAAACACTTTCCGAACTTCTCCCCC.CAAACCCGCCCCCCggc                                >  2:4604840/1‑100 (MQ=9)


                                                                        aaTATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GCCCCGGCGCCGCCCGGGCGGAAACAACTCCCGCACCTCT.CCCC.CCAAACCCgccgcccggc                               >  2:3422246/1‑97 (MQ=9)


                                                                          tatCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GCCCCCGCGCCGCCGCGGCGGAAACACCTTCCGCACCTCT.CCCC.CCAAACCCGcccccgcgccc                             >  2:2433057/1‑96 (MQ=9)


                                                                           atCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GCCCCCGCGCGGCCGCGGCGGAATAACTTGCCCAACCTCT.CCCC.CCAATACAGCCGCCggcgccc                            >  2:776180/1‑96 (MQ=12)


                                                                            tCCCGGGGG.TCG.GGGGGCGCAC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCcgc                           <  2:4134883/101‑1 (MQ=255)


                                                                            cccgggggg.CCC.GGGGGCGCAC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCcgc                           <  2:3994330/97‑1 (MQ=37)


                                                                            acccGGGGGCCCC.GGGGGGGGAC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCcg                            <  1:7269218/100‑1 (MQ=37)


                                                                             cccGGGGG.GCC.GGGGGGGGGC.CCCCCG.GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCcgc                           <  1:7117643/101‑1 (MQ=37)


                                                                               cGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GGCCCGGGGCCCCCGGGGGGGAAAAACCTGCCGCCACTCT.CCCACCAAACCGGGCCCCCGGCCCcccgc                         >  2:5836494/1‑100 (MQ=2)


                                                                               cGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GGCCCCGCGCAGCCGCGGCGGAAAAACTTGCCCACCCTCTCCCCC.CAAACCCGCCCCCCGGCccccggc                         >  2:7739516/1‑97 (MQ=9)


                                                                               cGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GCCCCGGCGCCGCCGAGGCGGAAACACTTGCCGAACTTCT.CCCA.CCAAACCGCCCGCCGGGCCcgcgcc                        >  2:5559878/1‑99 (MQ=21)


                                                                                ggggg.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GCCCCGGCGCCGCCGAGGCGGAAACAATTGCCGAACATCT.CCCC.CCAAACCCGCCCCCCGCCCcgcgccc                       >  1:7024817/1‑98 (MQ=12)


                                                                                ggggg.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GCCCCGGGGCCGGCGAGGGGGAAACAATTGCCGGACCTCT.CCCC.CAAAACCCGCCCCCCGGCCcccgccc                       >  1:3196670/1‑98 (MQ=9)


                                                                                  ggg.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GCCTCGGGGCAGCCGAGGCGGAAACACTTTCCGCACTTCT.TCCC.CACAACCCGCCGCCCGTCCCCCGTccca                     >  2:6788004/1‑98 (MQ=16)


                                                                                  ggg.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GCCCCGGCGCCGCCGCGGCGGAAACACCTGCCGCACTTCT.CCCC.CCCAAACGGCCGCCCGGCCCCCGTccca                     >  2:625863/1‑98 (MQ=12)


                                                                                   gg.TCC.GGGGGCGGAG.CCCCC..GGCGGGGG.GCCCCGGCGCCGCCGGGGGGGAAACAATCGCCGCACCTCTCCCCC.CAAACCCGCCCCCCGGCccccggccaag                     >  1:3743121/1‑93 (MQ=2)


                                                                                   gg.TCC.GGGGGCGGAG.CCCCC..GGCGGGGC.GCCCCGGGGCGGCCCCGGCGGAAAAACTTTCCGCACCTCT.CCCC.CCCAACCCGCCGCCCGGccccccgccaac                    >  1:6285689/1‑92 (MQ=2)


                                                                                    gggccggggggCGGCC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCaaa                     <  2:8026102/95‑1 (MQ=38)


                                                                                    g.TCG.GGGGGGGGCC.CCCCG..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGc                   <  2:8843323/101‑1 (MQ=38)


                                                                                     ggcgggggggCGCCC.CCCCG..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAg                    <  1:4615020/96‑1 (MQ=37)


                                                                                      ggcggggggCGGCC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGc                   <  1:302086/97‑1 (MQ=255)


                                                                                       cc.GGGGGCGGAG.CCCCC..GGCGGGGC.GCCCCCGGGCGGCCCAGGGGGAAACACCTGCCGGACATCT.CCCC.CCAAAACCGCCGCCCGGCCCGCCCCaaaacct                 >  1:5160184/1‑97 (MQ=2)


                                                                                        c.GGGGGCGGAC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTc                <  2:2199867/101‑1 (MQ=255)


                                                                                         ggggggGGGGG.CCCCCG.GGCGGGTC.GCCCCGGCGCAGCCGAGGCGAAATCCCTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCtt                 <  1:8335538/100‑1 (MQ=37)


                                                                                         ggggggGGGCC.CCCCG..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTc                <  1:2553132/100‑1 (MQ=38)


                                                                                         ggggggCGGCC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTc                <  2:8747734/100‑1 (MQ=255)


                                                                                           ggggGGGCG.CCCCCGGGGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTc                <  1:1783023/101‑1 (MQ=37)


                                                                                            gggCGGAG.CCCCC..GGCGGGGG.GCCTCCGCGCCGGCGGGGGGGAAACACTTGCCGAACTTCT.CCCC.CCAAACCCCCCGCCCGGCCCCCCTCGAAACTTcccc             >  2:18266/1‑98 (MQ=255)


                                                                                             ggccccgcccccg..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGACCTTCC.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGct             <  1:154903/93‑1 (MQ=37)


                                                                                             ggCGGCC.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGctc            <  1:5046362/101‑1 (MQ=255)


                                                                                               gggccccccgc..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGctct           <  2:165479/95‑1 (MQ=255)


                                                                                               cGGAG.CCCCC..GGCGGGGG.GCCCCGGCGCAGGCGCGGCGGAAACACATTCCGGACTTCT.CCCC.CCAAACCAGCCCCCGGGCCCCCGCCCAAGCTTCGCTCTg          >  2:2183471/1‑101 (MQ=255)


                                                                                                ggAG.CCCCC..GGCGGGTC.GCCCCGGCGCCGCCGAGGCGGAAACACTTTCCGAACTTCT.CCCC.CCAAACCCGCCGCCGGGCCCCCCTCCAAACTTCGCTCTgc         >  2:6953201/1‑101 (MQ=19)


                                                                                                cgcacccccg..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTg          <  2:7574956/96‑1 (MQ=255)


                                                                                                     ccccc..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTc     <  2:3805931/101‑1 (MQ=255)


                                                                                                      cccc..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTgcgcccc    <  2:3908458/101‑4 (MQ=255)


                                                                                                        cc..GGCGGGGC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCTCTcgcc  <  2:3474095/101‑1 (MQ=255)


CTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGA.CAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGG.TCC.GGGGGCGGAG.CCCCC..GGCGGGTC.GCCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTCT.CCCA.CAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCC  >  NC_014034/392362‑392562

Base quality scores:


ATCG

< 3 ≤


ATCG

< 15 ≤


ATCG

< 26 ≤


ATCG

< 33 ≤


ATCG

< 41 ≤


ATCG