BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395831 =	318 (1.050)	101 (0.330)	10/132	27.6	0.24	intergenic (+643/‑288)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
*	?	NC_014034	= 1396198	313 (0.680)	101 (0.330)	10/132	27.6	0.24	coding (80/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

Only 100 of 532 total aligned reads displayed.


TGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACG  >  NC_014034/1395731‑1395931


 ggTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.Cg                                                                                                            >  2:1985232/1‑101 (MQ=255)


  gTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGt                                                                                                           <  2:2353029/101‑1 (MQ=255)


   tATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTc                                                                                                          >  1:354873/1‑101 (MQ=255)


    aTGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCg                                                                                                         >  2:369108/1‑101 (MQ=255)


       gATCTGGCGCAAACGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGGGTTGCCAGGGATAGC.CGCCGTGGA.CGTCGccc                                                                                                      >  2:3571059/1‑99 (MQ=255)


        aTCTGGCGCAAACGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTcc                                                                                                     >  2:6154593/1‑101 (MQ=255)


            ggCGCAAACGGAGAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTcccccc                                                                                                 >  1:6504893/1‑101 (MQ=255)


            ggCGCAAACGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTcccccc                                                                                                 <  1:5605587/101‑1 (MQ=255)


              cgcAAACGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCcgc                                                                                               <  1:6356054/101‑1 (MQ=255)


               gcAAACGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCcgcg                                                                                              <  1:1429192/101‑1 (MQ=255)


                cAAACGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCgg                                                                                             >  1:3774314/1‑101 (MQ=255)


                 aaaCGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCggg                                                                                            >  2:4711469/1‑101 (MQ=255)


                    cGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGc                                                                                         <  2:80889/101‑1 (MQ=255)


                    cGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGc                                                                                         >  1:4827525/1‑101 (MQ=255)


                      gAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGt                                                                                       >  1:4412105/1‑101 (MQ=255)


                      cggacccgcccgtcgCTCCCCCCGCGGGGGCGTGGATCGAAA.CTGCGTGCGCGCCATG.AATTCATCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCg                                                                                        >  2:7907905/11‑101 (MQ=0)


                       ggacccgcccgtcgCTCCCCCCGCGGGGGCGTGGATCGAAA.CTGCGTGCGCGCCATG.AATTCATCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCgg                                                                                       >  2:2626653/10‑100 (MQ=0)


                       ggacccgcccgtcgCTCCCCCCGCGGGGGCGTGGATCGAAA.CTGCGTGCGCGCCATG.AATTCATCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCgg                                                                                       >  2:5789354/10‑100 (MQ=0)


                        aaGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.TCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTgg                                                                                     <  2:1893884/101‑1 (MQ=255)


                        aaGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTgg                                                                                     >  2:3374072/1‑101 (MQ=255)


                        aaGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTgg                                                                                     <  2:6504641/101‑1 (MQ=255)


                         aGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGGGGGGa                                                                                    >  1:2560247/1‑101 (MQ=255)


                          ggcTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGAt                                                                                   <  2:7406561/99‑1 (MQ=255)


                          gTCTGTCGGCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGAt                                                                                   <  2:8741910/101‑1 (MQ=255)


                           tCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATc                                                                                  >  2:1642099/1‑101 (MQ=255)


                           tCTGTCGTCGCTACCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATc                                                                                  >  1:8074815/1‑101 (MQ=255)


                            cTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                                                 >  1:5655028/1‑101 (MQ=255)


                              gtcgtcGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                                                               >  1:408532/1‑101 (MQ=255)


                                cgtcgCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                                             >  2:677526/1‑101 (MQ=255)


                                cgtcgCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                                             >  1:4607539/1‑101 (MQ=255)


                                 gtcgCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt                                                                            >  1:3323533/1‑101 (MQ=255)


                                   cgCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTgc                                                                          >  1:5309962/1‑101 (MQ=255)


                                    gCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTgcg                                                                         >  2:8264772/1‑101 (MQ=255)


                                     cTCCCCCCGCGGGGGCGTGGATCGAAA.CTGAGTGCGCGCCATG.AATTGATCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCGGGGATCGATAcgcca                                                                         >  2:8189093/1‑97 (MQ=2)


                                        cccccGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGcg.ccgc                                                                    <  1:123949/101‑1 (MQ=255)


                                         ccccGCGGGGGCGTGGATCGAAACCTGCG.GCGTGGGTTGCCAGTGATAGA.CGCCGGGGA.CGTCGCTCCCCCCGCGGGGGCGTGGCTCGAAACTGcg.ccgac                                                                   >  2:2865941/1‑99 (MQ=255)


                                         ccccGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCg.ccgc.c                                                                  >  2:761426/1‑101 (MQ=255)


                                         ccccGCGGGGGCGTGGATCGAAACCTGCG.GCGGGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCg.ccgc.c                                                                  >  2:3227267/1‑101 (MQ=255)


                                            cgcgGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTAt                                                               <  2:3775159/101‑1 (MQ=255)


                                             gcgGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATc                                                              <  2:6084373/101‑1 (MQ=255)


                                             gcgGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATc                                                              >  2:1100724/1‑101 (MQ=255)


                                              cgGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCg                                                             >  1:2397642/1‑101 (MQ=255)


                                                ggggCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCa                                                           >  1:8739942/1‑101 (MQ=255)


                                                 gggCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCAt                                                          >  1:3053852/1‑101 (MQ=255)


                                                  ggCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATc                                                         <  1:8231073/101‑1 (MQ=255)


                                                  ggCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATc                                                         <  1:8550700/101‑1 (MQ=255)


                                                  ggCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATc                                                         >  2:142827/1‑101 (MQ=255)


                                                   gCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATcc                                                        <  1:1088598/101‑1 (MQ=255)


                                                   gCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATcc                                                        <  1:9092110/101‑1 (MQ=255)


                                                    cGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCg                                                       <  2:4514164/101‑1 (MQ=255)


                                                    cGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCg                                                       <  1:5062623/101‑1 (MQ=255)


                                                     gTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCgg                                                      <  1:7192468/101‑1 (MQ=255)


                                                      tGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...t                                                  <  2:5123748/101‑1 (MQ=255)


                                                       ggATCGAACCCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...Tc                                                 <  1:4252370/101‑1 (MQ=255)


                                                       ggATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CGGC.CTATAGCATCCGG...Tc                                                 >  2:5423314/1‑101 (MQ=255)


                                                          tCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGT.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAg                                              <  1:6266632/101‑1 (MQ=255)


                                                          tCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAg                                              <  1:738231/101‑1 (MQ=255)


                                                           cGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGAATCCGG...TCGAgc                                             >  1:8925272/1‑101 (MQ=255)


                                                             aaaCCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAgcgc                                           >  2:6442721/1‑101 (MQ=255)


                                                             aaaCCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...GCGAgcgc                                           >  2:2816183/1‑101 (MQ=255)


                                                                  tGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.gcg.c                                    <  2:124229/101‑1 (MQ=255)


                                                                  tGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.gcg.c                                    >  2:4885492/1‑101 (MQ=255)


                                                                    cg.gcgTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAg                                  >  1:6633721/1‑101 (MQ=255)


                                                                       gcgTGAGTTGCCAGTGATAAA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTc                                <  2:6563097/101‑1 (MQ=255)


                                                                        cgTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCg                               <  2:5233996/101‑1 (MQ=255)


                                                                        cgTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCg                               >  1:4937915/1‑101 (MQ=255)


                                                                         gTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGc                              >  1:7607897/1‑101 (MQ=255)


                                                                         gTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGc                              >  2:5540845/1‑101 (MQ=255)


                                                                           gAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTc                            <  1:7818478/101‑1 (MQ=255)


                                                                            aGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTcc                           <  1:5132372/101‑1 (MQ=255)


                                                                            aGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTcc                           >  1:2188414/1‑101 (MQ=255)


                                                                                gCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTcccccc                       <  2:408524/101‑1 (MQ=255)


                                                                                 cagatgctAGC.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAACCTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCcg                      <  1:2913843/94‑1 (MQ=38)


                                                                                  cAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCcgc                     >  1:5901632/1‑101 (MQ=255)


                                                                                  cAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCcgc                     >  2:8499284/1‑101 (MQ=255)


                                                                                   aGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCcgcg                    >  2:6681059/1‑101 (MQ=255)


                                                                                      gATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCgggg                 >  1:614954/1‑101 (MQ=255)


                                                                                        tAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGc               >  2:6944547/1‑101 (MQ=255)


                                                                                        tAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGc               <  1:6804938/101‑1 (MQ=255)


                                                                                        tAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGc               <  1:3725089/101‑1 (MQ=255)


                                                                                        tAGA.CGCCGTGCA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGc               <  2:770825/101‑1 (MQ=255)


                                                                                         aGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGGCGCTCCCCCCGCGGGGGCg              >  2:8822694/1‑101 (MQ=255)


                                                                                               cggcccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTCTGGTGCC.GCT.GCGTCGCTCCCCCCGCGGGGGCGt             >  1:5501247/9‑101 (MQ=2)


                                                                                               ccGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGCGTGGAt         <  2:5636510/101‑1 (MQ=255)


                                                                                               ccGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGCGTGGAt         >  2:7210822/1‑101 (MQ=255)


                                                                                               ccGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGCGTGGAt         <  1:6718845/101‑1 (MQ=255)


                                                                                                ggcccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTCTGGTGCC.GCT.GCGTCGCTCCCCCCGCGGGGGCGTg            >  2:7078100/8‑101 (MQ=2)


                                                                                                 gTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGCGTGGATCg       >  2:1767133/1‑101 (MQ=255)


                                                                                                 gTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGCGTGGATCg       <  1:6913876/101‑1 (MQ=255)


                                                                                                  tGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGCGTGGATCGa      <  2:2116060/101‑1 (MQ=255)


                                                                                                  cccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTCTGGTGCC.GCT.GCGTCGCTCCCCCCGCGGGGGCGTGGa          <  1:1787703/96‑1 (MQ=0)


                                                                                                  cccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTCTGGTGCC.GCT.GCGTCGCTCCCCCCGCGGGGGCGTGGa          >  2:2545548/6‑101 (MQ=0)


                                                                                                  cccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTCTGGTGCC.GCT.GCGTCGCTCCCCCCGCGGGGGCGTGGa          >  1:602646/6‑101 (MQ=0)


                                                                                                   ggA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGCGTGGATCGaa     <  2:3037912/101‑1 (MQ=255)


                                                                                                    gcccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCAT.GAATTC.A...TCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCg       <  1:1003239/98‑1 (MQ=2)


                                                                                                    cggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTCTGGTGCC.GCT.GCGTCGCTCCCCCCGCGGGGGCGTGGATc        <  1:2037097/98‑1 (MQ=2)


                                                                                                    cggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTCTGGTGCC.GCT.GCGTCGCTCCCCCCGCGGGGGCGTGGATc        <  1:8340378/98‑1 (MQ=2)


                                                                                                     cccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCAT.GAATTC.A...TCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGa      >  1:2657028/3‑101 (MQ=2)


                                                                                                     a.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc   >  2:4307400/1‑101 (MQ=255)


                                                                                                       cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTCTGGTGCC.GCT.GCGTCGCTCCCCCCGCGGGGGCGTGGATCGaa     <  2:6255251/101‑1 (MQ=2)


TGGTATGGATCTGGCGCAAACGGAAAGTCTGTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTGCG.GCGTGAGTTGCCAGTGATAGA.CGCCGTGGA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TCGAGCGCC.GCG.CAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACG  >  NC_014034/1395731‑1395931

Base quality scores:


ATCG

< 3 ≤


ATCG

< 20 ≤


ATCG

< 29 ≤


ATCG

< 34 ≤


ATCG

< 40 ≤


ATCG