BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1103383	286 (0.690)	114 (0.280)	26/180	24.2	0.34	intergenic (‑383/+35)	ugpB/regA2	sn‑glycerol‑3‑phosphate‑binding periplasmic protein ugpB/photosynthetic apparatus regulatory protein RegA
*	?	NC_014034	= 2330280	163 (0.360)	114 (0.280)	26/180	24.2	0.34	intergenic (+255/+57)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

Only 100 of 275 total aligned reads displayed.


CCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCCGGGG....G.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTC  >  NC_014034/2330180‑2330373


 ccGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcc                                                                                                       >  1:4565231/1‑101 (MQ=255)


 ccGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcc                                                                                                       <  2:2251190/101‑1 (MQ=255)


  cGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtccc                                                                                                      >  1:7092585/1‑101 (MQ=255)


  cGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtccc                                                                                                      <  1:2136452/101‑1 (MQ=255)


   gCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCGCGGGCGGCTTTCACCTGGGGCCAAAGAtcccg                                                                                                     >  2:6763280/1‑101 (MQ=255)


    cACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgg                                                                                                    >  2:5679660/1‑101 (MQ=255)


    cACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgg                                                                                                    >  1:7976251/1‑101 (MQ=255)


    cACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgg                                                                                                    >  1:1792042/1‑101 (MQ=255)


    cACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgg                                                                                                    >  2:4562581/1‑101 (MQ=255)


    cACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgg                                                                                                    >  2:6270975/1‑101 (MQ=255)


    cACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgg                                                                                                    >  1:8575380/1‑101 (MQ=255)


       ccccGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccggggg                                                                                                 >  1:6315562/1‑101 (MQ=255)


       ccccGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccggggg                                                                                                 >  2:1675249/1‑101 (MQ=255)


       ccccGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccggggg                                                                                                 >  2:3392217/1‑101 (MQ=255)


         ccGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtc                                                                                               <  2:7092300/101‑1 (MQ=255)


           ggCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCTGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccg                                                                                             <  2:5819927/101‑2 (MQ=255)


            gCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgg                                                                                            <  1:8226667/101‑3 (MQ=255)


             cGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccggg                                                                                           >  1:3884172/1‑101 (MQ=255)


              gTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg                                                                                          >  1:3373227/1‑101 (MQ=255)


              gTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg                                                                                          >  1:3716220/1‑101 (MQ=255)


              gTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg                                                                                          >  2:3913294/1‑101 (MQ=255)


               tATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccggggg                                                                                         >  2:2482607/1‑101 (MQ=255)


               tATTTGCGCAAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccggggg                                                                                         >  2:5161235/1‑101 (MQ=255)


                aTTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggc                                                                                        >  2:6517979/1‑100 (MQ=255)


                aTTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggc                                                                                        >  1:8470126/1‑100 (MQ=255)


                aTTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggc                                                                                        >  2:5772727/1‑100 (MQ=255)


                aTTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggc                                                                                        >  1:5186846/1‑100 (MQ=255)


                aTTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggc                                                                                        >  1:2860056/1‑100 (MQ=255)


                 tttGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcg                                                                                       >  2:7935850/1‑99 (MQ=255)


                  ttGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcgg                                                                                      >  1:7504514/1‑98 (MQ=255)


                   tGCGCCAAGAAAAAGCCGGGGCTCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcgga                                                                                     <  2:2002245/101‑5 (MQ=255)


                   tGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcgga                                                                                     <  2:1820431/101‑5 (MQ=255)


                   tGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcgga                                                                                     >  1:4945020/1‑97 (MQ=255)


                      gcCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagcc                                                                                  <  2:2701964/101‑8 (MQ=255)


                       ccAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagccc                                                                                 >  2:8401778/1‑93 (MQ=255)


                       ccAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagccc                                                                                 >  1:4201288/1‑93 (MQ=255)


                       ccAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccggggggccgggggcggagccc                                                                                 >  1:400534/1‑93 (MQ=255)


                         aaGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagccccc                                                                               >  1:5969575/1‑91 (MQ=38)


                         aaGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGT.CCGGGG....G.....cggagccccc                                                                     <  1:3005626/101‑10 (MQ=38)


                          aGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGT.CCGGGG....G.....cggagcccccg                                                                    <  1:331288/101‑11 (MQ=38)


                                    ggggCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGcc                                                               <  2:7702527/101‑1 (MQ=25)


                                     gggCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTGGccc                                                              >  2:4171572/1‑100 (MQ=21)


                                     gggCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCg                                                              <  2:2870794/101‑1 (MQ=25)


                                         gcgcATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGccccggc                                                          >  2:1190423/1‑96 (MQ=21)


                                         gcgcAGGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGc                                                          <  2:8434299/101‑1 (MQ=21)


                                            cATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATc                                                       <  2:3568311/101‑1 (MQ=25)


                                            cATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGGgggggc                                                       >  1:7185104/1‑97 (MQ=21)


                                             aTGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCCCGGCagcc                                                      >  1:687971/1‑98 (MQ=18)


                                                cGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGGGCCGGGGCGTCGccc                                                   >  1:5691122/1‑100 (MQ=18)


                                                cGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGGgggggccccc                                                   >  1:2712713/1‑93 (MQ=18)


                                                 ggggCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTc                                                  <  1:8122816/101‑1 (MQ=25)


                                                   ggCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCCCgg                                                >  2:3217607/1‑101 (MQ=21)


                                                    gCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGc                                               <  1:5012894/101‑1 (MQ=25)


                                                      cccGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGa                                             <  1:926237/101‑1 (MQ=25)


                                                      cccGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGGGCCGCGGGGACGCCTCCGCGa                                             >  2:4679611/1‑101 (MQ=12)


                                                       ccGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGaa                                            <  2:7254900/101‑1 (MQ=25)


                                                          gATCCCCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATc                                         <  1:4799057/101‑1 (MQ=21)


                                                           aTCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGCGGGAGACCCTCGGCGacaacc                                        >  2:2095552/1‑96 (MQ=12)


                                                             cACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCt                                      <  1:6518239/101‑1 (MQ=25)


                                                              aCCGGCGGCCCGGGCGGCTTTCACCGGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCtt                                     <  2:8881612/101‑1 (MQ=21)


                                                                cggcggCCCGGGCGGCTTTCCCCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAg                                   <  2:3114116/101‑1 (MQ=21)


                                                                cggcggCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCCCGGGCTCGCCCCCGCGGAAAcccctct                                   >  2:7413751/1‑97 (MQ=9)


                                                                 ggcggcCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGGGGCGGGGGAACGCCCCCGCGAAAACCCCTact                                  >  1:7911744/1‑99 (MQ=9)


                                                                   cggcCCGGGCGGCTTTCCCCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTaa                                <  2:856205/101‑1 (MQ=21)


                                                                    ggcCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTaaa                               <  2:4062055/101‑1 (MQ=25)


                                                                     gcCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAg                              <  1:8738777/101‑1 (MQ=25)


                                                                        cGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAcc                           <  2:2542815/101‑1 (MQ=25)


                                                                        cGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGAGGCATCGCCCCGGCGGAAACCCCTAGTAAAGaac                           >  1:1506806/1‑99 (MQ=16)


                                                                        cGGGCGGCTTTCACCGGGGGCCAAAGATCCGGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAcc                           <  1:2336807/101‑1 (MQ=21)


                                                                         gggCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAccg                          <  1:7326813/101‑1 (MQ=25)


                                                                           gcggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAccgcc                        <  2:5034124/101‑1 (MQ=25)


                                                                           gcggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGCGGCAGCGCCTCGGCGACAACCCTTAGTTAACAccggc                        >  2:2600063/1‑99 (MQ=12)


                                                                           gcgccTTCCCCCGGGGGCAAAAGA.CCCGGGGGGCCCGGGG....GCGGACCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAccgcc                        <  1:3250187/101‑1 (MQ=16)


                                                                             ggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGAGGGAGCGCCCCGCCGGAATCCCTTTGTTAAGaaacgccc                      >  1:2001755/1‑94 (MQ=9)


                                                                              gcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGCCGCCGCGGGATCGCCCCCGCGCAACCCCTTATTAAAAAacgccccc                     >  2:5967935/1‑99 (MQ=9)


                                                                               cTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCcgcg                    <  2:7465243/101‑1 (MQ=21)


                                                                                tttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCgg                   <  2:1559992/101‑1 (MQ=21)


                                                                                tttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGAGGCATCGCCCCGGCGAAAACCCCTAGTAAAGACCGCCCGCgg                   >  1:1605223/1‑101 (MQ=18)


                                                                                tttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCCCCGAGGGATCGCCCCGGCGGAAACCCCTAGTAAAAAccgccccccg                   >  1:960515/1‑97 (MQ=9)


                                                                                 ttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGGGGCATCGCCCCGGCCGAAACCCCTAGTAAAGAACGCCCCCggg                  >  1:4486765/1‑100 (MQ=9)


                                                                                  tcgccgggggCCAAAGATCCGGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGAc                 <  1:5600589/95‑1 (MQ=21)


                                                                                    aCCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGGGGCATCGCCTCGGCGGAATCCCCTAGTAAAGACCGCCCCCCGACAg               >  2:3665679/1‑101 (MQ=12)


                                                                                    aCCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGCGGGATCGCCCCCGCGGAAACCCCTCGGAAAAACCGCCCCCCGACAg               >  2:1036639/1‑101 (MQ=2)


                                                                                      ccggggCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAggg             <  1:853161/99‑1 (MQ=21)


                                                                                      cTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGGGGGATCGCCCCGGCGGAAAACCCTAGTAAAAACCGCCCGCGGGGAggg             >  1:5080610/1‑101 (MQ=2)


                                                                                       tGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGGGCCGAGGCATCGCCTCCGCGCAATCCCCTAGTAAAGACCGCCCCCGGGCAgggg            >  2:4393309/1‑100 (MQ=12)


                                                                                       tGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGGGGGATCGCCCCCGCGGAAACCCTTTGTAAAAACCGCCCCCCGGCAgggg            >  1:1030172/1‑100 (MQ=2)


                                                                                        ggggCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGAt           <  2:631264/101‑1 (MQ=21)


                                                                                         gggCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATc          <  1:2600145/101‑1 (MQ=21)


                                                                                         gggCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGAACGCCCGCGGACAGGGGTc          >  2:3053542/1‑101 (MQ=18)


                                                                                            ccAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGa       <  1:5332044/101‑1 (MQ=21)


                                                                                            ccAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGGGGGAGCGCCCCCGCGAAAACCCCTTGTAAAAACCACCCGCGGGCAGGGGTCCgc       >  1:6174587/1‑100 (MQ=0)


                                                                                             cAAAGATCCCGGGGGTCGGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGaa      <  2:7300537/101‑1 (MQ=21)


                                                                                              aaaGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAg     <  2:2350690/101‑1 (MQ=21)


                                                                                              aaaGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAg     <  2:4819042/101‑1 (MQ=21)


                                                                                              aaaGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCCAGGGGGCGCCCCCGCGGAAACCCTTAGTAAAAAACGCCCCCGGACAGGGAGCCGAAg     >  1:7441682/1‑101 (MQ=2)


                                                                                               aaGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGAGGCATCGCCCCCGCGGAAACCCTTAGTAAAAAACGCCCCCGGGCAGGGGGCCGAAgg    >  2:3690508/1‑101 (MQ=9)


                                                                                                aGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGGGCCGGGGGATCGCCCCGGCGAAAACCCTTAGTAAAAAACGCCCCCGGACAGGGAGCCGGAggg   >  1:3604370/1‑100 (MQ=9)


                                                                                                aGATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCCGGGCATCGCCCCGGGGAAAACCCTTTGTAAAAACCGCCCGCGGGCAGGGAACCGaaagg   >  1:1156002/1‑98 (MQ=9)


                                                                                                 gATCCCGGGGGTCCGGGGGCGGAG.....CCCCCGGCGGGGCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAAACCGCCCGCGGGCAGGGAGCCGaaaggc  >  2:6858055/1‑97 (MQ=16)


CCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCCGGGG....G.....CCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTC  >  NC_014034/2330180‑2330373

Base quality scores:


ATCG

< 3 ≤


ATCG

< 20 ≤


ATCG

< 27 ≤


ATCG

< 33 ≤


ATCG

< 41 ≤


ATCG