BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1253895 =	93 (0.250)	67 (0.180)	14/164	28.8	0.28	intergenic (+53/+38)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
*	?	NC_014034	= 2590203	257 (0.560)	67 (0.180)	14/164	28.8	0.28	intergenic (‑102/‑154)	glnE/RCAP_rcc02415	glutamate‑ammonia‑ligase adenylyltransferase/hypothetical protein
Rejected: Position hash score below cutoff.

Only 100 of 301 total aligned reads displayed.


GCGCCAGACTAGCCGCCGCAAGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CG..CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTGACCCGGACCCGCG  >  NC_014034/2590103‑2590302


  gcCAGACTAGCCGCCGCAAGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CG..cccc..cc                                                                                                      >  1:3336921/1‑100 (MQ=255)


   ccAGACTAGCCGCCGCAAGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CG..cccc..ccg                                                                                                     >  1:6152591/1‑99 (MQ=255)


    cAGACTAGCCGCCGCAAGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CG..cccc..ccgc                                                                                                    >  2:6830138/1‑98 (MQ=255)


     aGACTAGCCGCCGCAAGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CG..cccc..ccgcc                                                                                                   >  2:7701116/1‑97 (MQ=255)


      gACTAGCCGCCGCAAGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CG..cccc..ccgccg                                                                                                  >  2:6689802/1‑96 (MQ=255)


         tAGCCGCCGCAAGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGt                                                                                             >  2:8486488/1‑101 (MQ=255)


          aGCCGCCGCAAGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTc                                                                                            >  2:7514116/1‑101 (MQ=255)


             cgccacAAGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGGGCGGGGGG.C.GG..CGC.CCCC..C.G..CCGGGTCGcc                                                                                         <  2:2963211/101‑1 (MQ=255)


                ccgaacccccGGGTCAAGGGCGCCCAACCCCCCCCCCCCTGTCCT.CTTGGCGCGAATACCCG..GGGGGGGGGGGGGGGCC.CC..CC..CCCC..C.G..CCGGGTCGCCTc                                                                                       <  2:1373317/95‑1 (MQ=255)


                   aaGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCGTCGgcg                                                                                   >  2:4008841/1‑101 (MQ=255)


                   aaGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCCCGgcg                                                                                   >  2:5803855/1‑101 (MQ=255)


                    aGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGgcgc                                                                                  >  1:1139485/1‑101 (MQ=255)


                         cGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGcc                                                                             >  2:6151082/1‑101 (MQ=255)


                         cGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGcc                                                                             >  1:727394/1‑101 (MQ=255)


                         cGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGcc                                                                             >  1:6282277/1‑101 (MQ=255)


                          gggTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGCCGCCTCGGCGCAACCCg                                                                            >  1:2898238/1‑101 (MQ=38)


                          gggTCAA.GGCGCACAAATGCCCCGCCCCGGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGAG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCg                                                                            >  1:6520340/1‑101 (MQ=38)


                          gagTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGGCGCCTCGGCGCAAGCCg                                                                            >  2:5045244/3‑101 (MQ=255)


                           ggTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGa                                                                           >  2:2299883/1‑101 (MQ=255)


                              cAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCACGCCGAGGc                                                                        >  1:1959673/1‑101 (MQ=255)


                              cAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGc                                                                        >  1:6629919/1‑101 (MQ=255)


                              cAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAACCCGAGGc                                                                        >  1:6886238/1‑101 (MQ=255)


                              cAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCGCCGCGCagcccggggg                                                                        >  2:7352949/1‑92 (MQ=25)


                               aa.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCg                                                                       >  2:3465550/1‑101 (MQ=255)


                               aa.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCg                                                                       >  1:5467984/1‑101 (MQ=255)


                               aa.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCg                                                                       >  2:4612483/1‑101 (MQ=255)


                               aa.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCg                                                                       >  2:4495427/1‑101 (MQ=255)


                                a.GGCACGCACACGCCCCGCCCCTTGCAT.CTTGGGCCGAATTTCCC..GGGGGGGGCGGGGGG.C.CGCCCC..CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCg                                                                       <  2:1112636/101‑1 (MQ=19)


                                     gcgcAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAAtc                                                                  >  2:177442/1‑101 (MQ=255)


                                     gcgcAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAAtc                                                                  >  1:445759/1‑101 (MQ=255)


                                       gcAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAAtctc                                                                >  1:2461721/1‑101 (MQ=255)


                                       gcAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGAGGAAGCCGAGGCGACAtctc                                                                >  2:3781118/1‑101 (MQ=37)


                                        cAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAAtctct                                                               >  2:6320970/1‑101 (MQ=255)


                                        cAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGGCGCCTCGGCGCAAGCCGAGGCGAAAgctct                                                               >  2:5334604/1‑101 (MQ=38)


                                        cAAACGCCCCGCCCCGTCCAT.GTGGGCGCGAATCTCCC..GGGGGGTGCGGGGGG.C.AGC.CC..CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAAtctct                                                               <  2:4262001/101‑1 (MQ=25)


                                         aaaTGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAAtctctc                                                              >  1:1848888/1‑101 (MQ=255)


                                         aaaTGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAAtctctc                                                              >  1:4868907/1‑101 (MQ=255)


                                         aaaTGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAAtctctc                                                              >  2:1614950/1‑101 (MQ=255)


                                         aaaTGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGCCGCCCCGGGGCAAGCCGAGGCGAAAtctctc                                                              >  2:5631326/1‑101 (MQ=37)


                                           ccccccccccccTGTCCC.TTGGGGGCGAA.ATCCCGGGGGGGGGGGGGGGGG.C.CGC.CC..CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTcc                                                             <  2:4665892/98‑1 (MQ=9)


                                             gccccgccccTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCg                                                          >  1:9163846/1‑101 (MQ=255)


                                             ccccccccccCGTCCTCCTGGGCGTGAATGCCCG..GGGGGGGGGGGGGGG.C.GGC.CC..CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTcccc                                                           <  2:9078169/100‑1 (MQ=12)


                                              ccccgccccTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCgc                                                         >  2:6985598/1‑100 (MQ=255)


                                                ccgccccTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGAcc                                                       >  1:1329273/1‑101 (MQ=255)


                                                    cccTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCtt                                                   >  2:5877105/1‑101 (MQ=255)


                                                     cgtttcct.CTGGGCGCAAATCCCCG..GGGGGGGGGGGGGGG.C.AGC.CC..CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTg                                                  <  2:7191260/94‑1 (MQ=21)


                                                       tGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgcg                                                >  1:4590300/1‑101 (MQ=255)


                                                        gTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgcgg                                               >  2:2717364/1‑101 (MQ=255)


                                                        gTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgcgg                                               >  1:2113359/1‑101 (MQ=255)


                                                        gTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgcgg                                               >  2:3885808/1‑101 (MQ=255)


                                                        gTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgcgg                                               >  1:4417402/1‑101 (MQ=255)


                                                          cAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgcggcg                                             >  2:2081862/1‑101 (MQ=255)


                                                          cAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgcggcg                                             >  1:1199249/1‑101 (MQ=255)


                                                          cAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGAGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgcggcg                                             >  2:4089783/1‑101 (MQ=255)


                                                           cttttgggCGCAAATCCCCG..GGGGGGGGGGGGGGG.CGCC..CC..CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTgcggcg                                             <  2:1557956/95‑1 (MQ=16)


                                                              cTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCaa                                          >  2:8722580/1‑101 (MQ=255)


                                                               ttGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCaag                                         >  1:475137/1‑100 (MQ=255)


                                                               ttGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAAt                                         >  1:404151/1‑101 (MQ=255)


                                                                  gggggatggtCCG..GGGGGGGGGCGGGGG.C.AC..CC..CCCC..C.GGCCCGGGTCGCCACGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGt                                       <  1:5793140/92‑1 (MQ=19)


                                                                    gcgAATATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTaaa                                    >  2:819469/1‑101 (MQ=255)


                                                                       gggaacgccgggggggGGGGGGGGG.C.CG..CCCCCCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTaaa                                    <  1:5531659/91‑1 (MQ=21)


                                                                       aaTATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAAt                                 >  1:9187493/1‑101 (MQ=255)


                                                                       aaTATCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAAt                                 >  2:7797166/1‑101 (MQ=255)


                                                                        atatCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATc                                >  1:3664511/1‑101 (MQ=255)


                                                                         tatCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCt                               >  1:696435/1‑101 (MQ=255)


                                                                         ggcccc..GGGGGGGGGGGGGGC.G.CG..CC..CCCCGGC.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATc                                <  2:3613500/98‑1 (MQ=21)


                                                                          atCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCtt                              >  1:7499097/1‑101 (MQ=255)


                                                                          atCCC..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCtt                              >  1:5916405/1‑101 (MQ=255)


                                                                            ccc..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTc                            >  2:3104997/1‑101 (MQ=255)


                                                                            ccc..GGGGGGTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTc                            >  2:7054213/1‑101 (MQ=255)


                                                                            acccgggggggGGGGGGGGG.C.GC..CCC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCtt                              <  2:3696979/96‑1 (MQ=25)


                                                                             cgggggggggGGGGGGGCG.C.CC..CC..CCCC..C.C..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTc                            <  2:5992951/97‑1 (MQ=37)


                                                                             cgcgggggggGGCGGGGGG.C.CGC.CC..CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCttt                             <  2:2863103/97‑1 (MQ=37)


                                                                             ccggggggggGGGGGGGGG.C.CC..CC..CCCC..CAG..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCttt                             <  1:3386633/97‑1 (MQ=25)


                                                                               ggggggggGGGGGGGGC.C.CC..CC..CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTcac                          <  1:3855317/99‑1 (MQ=37)


                                                                               cgggggggGGCGGGGGG.C.CGC.CC..CCCC..C.GC.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTc                            <  2:6581973/99‑1 (MQ=37)


                                                                                 ggggggTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTcaca                         >  2:2580094/1‑101 (MQ=255)


                                                                                  gggggTGGGGGGGC.C.CC..CC..CCCC..CGG..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACAt                        <  2:8335311/101‑1 (MQ=37)


                                                                                  gggggTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACAt                        >  1:8362537/1‑101 (MQ=255)


                                                                                  gggggGGGGGGGGC.C.CG..CC..CCCC..C.GC.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACAt                        <  2:8020783/101‑1 (MQ=37)


                                                                                  gggggGGGGGGGGC.C.CC..CC..CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATc                       <  2:445736/101‑1 (MQ=37)


                                                                                     ggTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATccc                     >  2:329892/1‑101 (MQ=255)


                                                                                     ggTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATccc                     >  1:5066832/1‑101 (MQ=255)


                                                                                     ggTGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATccc                     >  1:8476416/1‑101 (MQ=255)


                                                                                       tGCGGGGGG.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCct                   >  2:8084529/1‑101 (MQ=255)


                                                                                       ggggggggg.C.CC..CC..CCCC..C.GC.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCct                   <  1:7422333/98‑1 (MQ=38)


                                                                                         ggggggg.C.CG..CCC.CCCC..C.C..CCGGGTCCCCCCGGGGGAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCctct                 <  1:6768976/100‑1 (MQ=255)


                                                                                          gggggg.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCtt                >  2:6506806/1‑101 (MQ=255)


                                                                                          gggggg.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCtt                >  1:8087310/1‑101 (MQ=255)


                                                                                               g.C.AG..CGC.CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgaccc           >  1:3530437/1‑101 (MQ=255)


                                                                                                  ggggcgccccccc..c.GC.CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTga              <  1:2516804/92‑1 (MQ=38)


                                                                                                  gccgccccccccc..c.C..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgac             <  1:7910574/92‑1 (MQ=38)


                                                                                                      cgccccccc..c.C..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccgg         <  2:8842663/96‑1 (MQ=255)


                                                                                                      agcgccccc..c.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccgg         >  2:4909407/6‑101 (MQ=255)


                                                                                                       cccccccc..g.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccgga        <  2:1848835/97‑1 (MQ=255)


                                                                                                        ccccccc..g.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccggac       <  2:5467799/98‑1 (MQ=255)


                                                                                                        ccccccc..c.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccggac       <  1:165335/98‑1 (MQ=255)


                                                                                                          ccccc..c.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccggaccc     >  2:7287132/2‑101 (MQ=255)


                                                                                                          ccccc..c.C..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTgacccggaccc     <  1:892549/100‑1 (MQ=255)


                                                                                                            ccc..c.C..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGTGGCGCAATGTAAAAATCTTTCACATCCCCTCTTGACCCGGACCcgc   <  2:9140016/101‑1 (MQ=255)


GCGCCAGACTAGCCGCCGCAAGCCCCGGGTCAA.GGCGCGCAAATGCCCCGCCCCTGTCAT.CTTGGCGCGAATATCCC..GGGGGGTGCGGGGGG.C.AG..CG..CCCC..C.G..CCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTTGACCCGGACCCGCG  >  NC_014034/2590103‑2590302

Base quality scores:


ATCG

< 3 ≤


ATCG

< 16 ≤


ATCG

< 26 ≤


ATCG

< 33 ≤


ATCG

< 41 ≤


ATCG