| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_014034 | 235582 = | 321 (0.720) | 2 (0.000) | 2/196 | 42.1 | 0.01 | intergenic (+11/+200) | RCAP_rcc00200/RCAP_rcc00201 | MarR family transcriptional regulator/adenine‑specific DNA‑methyltransferase |
| ? | NC_014034 | = 974196 | 19 (0.040) | intergenic (+76/+183) | RCAP_rcc00884/RCAP_rcc00885 | hypothetical protein/hypothetical protein | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
CGAGGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCG.......TCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG > NC_014034/974096‑974262
|
cGAGGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCGCGCCGTCGCGTGGCGACccgc < 2:198828/101‑1 (MQ=255)
cGAGGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACccgc < 1:11070/101‑1 (MQ=255)
cGAGGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACccgc < 1:7145330/101‑1 (MQ=255)
gAGGATGTTGCCGCGCACCTCTGACCGCCGCCGGATGGCATTCAAAAGGCGCCCCCGGGGC.CGCTTTTTTTTTT.CGCCCCGCTGTCGCGGGGCGCCccgcc < 2:7717940/101‑1 (MQ=255)
gAGGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACccgcc > 1:337753/1‑101 (MQ=255)
aGGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACccgcgg > 2:198415/1‑99 (MQ=255)
aGGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACccgccg > 1:1611385/1‑101 (MQ=255)
ggATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACccgcccg > 2:4570946/1‑99 (MQ=255)
aTGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACccgcccggg > 1:7595134/1‑97 (MQ=255)
tGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACccgccgggggcgg > 1:6775869/1‑94 (MQ=255)
gCCGCGCAACTCGGACCGCCGCGGGAGGGCATTCAAAGGGCCCCCCCGGGGG.CGCTTTTTTTTTT.CGCCACGCTGTCGCGGGGCGCCccgccggggggctt < 2:5001764/101‑9 (MQ=255)
ccGCGCACCTCGGAACGCCGCCGGATGGTATCCAAAGGGCCCCCCCGGGGG.CTCTTTTTGTTTC.CGCCCCGCTGCCGCGTGGCGACccgccggggggcttc < 2:1939606/101‑10 (MQ=255)
ccGCGCACCGCTGGACGCCGCCGGATGGCATTCAAAAGGCCCCCCCCGGGC.CGCTTTTTTTTTC.CGCCCCGCTGTCGCGTGGCGCCccgccggggggcttc < 2:1006524/101‑10 (MQ=255)
cgcgCACCTCTGACCGCCGCCGGATGGCATTCAAAGGGCCCCCCCGGGGG.CGCTTTTTGTTTT.CGCCCCGCTGTCGGGTGGCGCCccgccggggggcttcg < 2:8355302/101‑11 (MQ=255)
cgGATGGCTTGCAAAGGGCCCCCCCGGGGG.CGCTTTTTTTTTT.CCCCCCGCGGCCGCGGGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGt < 1:6210586/101‑1 (MQ=2)
gtcacATTAAAAGGGCCCCCCCGTGGT.CGCTTTTTTTTTT.CGCCCCGCTGGCGCGTGGCCCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTAtt < 2:4439005/97‑1 (MQ=2)
tgcacttCAAACGCCCCCCCCGGGGG.CTCTTTTTTTTTC.CGCCACGTTGTCGCGCGGCCACCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTAttt < 2:8137999/96‑1 (MQ=0)
gtccATTAAAACGGCCCCCCCGGGGC.CGCTTTTTTTTTC.CGCCCCGCTGTCGCGGGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTAttt < 1:5962823/98‑1 (MQ=2)
gcatcaaaagGGCGCCCCCGGGGG.CGCTTTTTTTTTC.CCCCCCGCGGTCGGGGGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGc < 1:2338325/95‑1 (MQ=2)
ctttCAAACGGCGCCCCCCGGGG.CGTTTTTTTTTTC.CCCCCCGCTGTCTCGGGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCa < 2:950250/99‑1 (MQ=2)
tCAAAGGGCCCCCCCGGGGG.CTCTTTTTTTTTC.CCCCGCGCTGTCGCGGGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCa < 1:6425794/101‑1 (MQ=2)
cAAAGGGCCCCCCCCGGGC.CCTTTTTTTTTTC.CCCCCCGCTGCCGCGTGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCaa < 1:7300501/101‑1 (MQ=2)
aagggCCCCCCCCGGGG.CCTCTTTTTTTTTCCCCCACGCTGTCGCGTGGCCCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAg < 2:1587586/98‑1 (MQ=2)
gggCCCCCCCGGGGG.CGTTTTTTTTTTT.CCCCCCGCTGGCGCGTGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGaaa < 1:7298404/100‑1 (MQ=2)
cgccccccccgGGGG.CGTTTTTTTTTTC.CGCCCCGCGGCCGCGTGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGaaa < 1:4424133/96‑1 (MQ=2)
cccccccgGGGG.CCCTTTTTGTTTC.CGCCCCGCTGCCGCGGGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAg < 1:2768014/99‑1 (MQ=2)
ccccccccGGGGCCGCTTTTTTTTTT.CGCCCCGCTGCCGCGGGGCCCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGaaaaa < 1:5704987/99‑1 (MQ=2)
ccccGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCGGGGGGCTTCGCCCCCCCGACCCCCCAGCGGCTTTGCACCAAGAAAAAACAGa > 1:2909050/1‑101 (MQ=16)
ggg.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCGGGGGGGCTCGGCCCCCGGACCCCCCCGCGTATTTGGACCAAAAAAAAACAGAcgggg > 2:8924496/1‑100 (MQ=12)
ggg.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCCGCGTATTTGCACCAAGAAAAAGCAGAcgggc > 2:8834024/1‑101 (MQ=18)
tttGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAAAAAAAGCAGACGGGCGGGGTCCg > 2:872852/1‑101 (MQ=18)
tGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCGGGGGGCTTCGCCCCCCGGGCCCCCCCGCGGCTTTGCACCCAGAAAAAGAAGACGGGCGGGGACCGGc > 1:2956943/1‑101 (MQ=9)
tt.CGCCACGCTGTCGCGTGGCGACCCGCCGGGGGGCTTCCCCCCCCGCACCCCCCAGCGCATTTGCACCAAGAAAAAGCAAACGGGCGGGATCCCGccagg > 1:7370770/1‑97 (MQ=9)
|
CGAGGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCG.......TCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG > NC_014034/974096‑974262
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 26 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|