BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 510081	277 (0.770)	19 (0.050)	8/158	32.4	0.11	intergenic (+68/+119)	RCAP_rcc00475/RCAP_rcc00476	acyl‑CoA dehydrogenase domain‑containing protein/hypothetical protein
*	?	NC_014034	= 2185957	37 (0.080)	19 (0.050)	8/158	32.4	0.11	intergenic (+230/‑275)	mtlK/RCAP_rcc02028	mannitol 2‑dehydrogenase/FeoA family protein
Rejected: Position hash score below cutoff.

Only 100 of 159 total aligned reads displayed.


CGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAACCG.CC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..CCC..G.CCGGGTCTCCTCCGGGAGCAAGGCCGAGGCGAGACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCA  >  NC_014034/2185857‑2186055


cGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATccc                                                                                                           <  1:7616185/101‑1 (MQ=255)


 ggaTTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCg                                                                                                          <  1:2965482/99‑1 (MQ=255)


 gTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCg                                                                                                          >  2:8669087/1‑101 (MQ=255)


 gTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCg                                                                                                          >  2:6505920/1‑101 (MQ=255)


 gTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCg                                                                                                          <  1:7013288/101‑1 (MQ=255)


 gTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCg                                                                                                          >  2:6409900/1‑101 (MQ=255)


 gTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCg                                                                                                          <  1:2190534/101‑1 (MQ=255)


 gTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCg                                                                                                          >  1:5698664/1‑101 (MQ=255)


  tATTTATCCCAAGAGAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCgg                                                                                                         <  1:7392147/101‑1 (MQ=255)


  tATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCgg                                                                                                         <  1:3326647/101‑1 (MQ=255)


  tATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCgg                                                                                                         <  2:1137394/101‑1 (MQ=255)


  tATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCgg                                                                                                         >  1:1967462/1‑101 (MQ=255)


   aTTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTTGCTCAAATATCCCggg                                                                                                        >  2:9001181/1‑101 (MQ=255)


   aTTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCggg                                                                                                        >  1:7497912/1‑101 (MQ=255)


   aTTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCggg                                                                                                        >  1:5107397/1‑101 (MQ=255)


   aTTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCggg                                                                                                        >  1:7834302/1‑101 (MQ=255)


   aTTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCggg                                                                                                        >  1:6792182/1‑101 (MQ=255)


   aTTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCggg                                                                                                        >  2:8385570/1‑101 (MQ=255)


   aTTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCggg                                                                                                        >  2:2773573/1‑101 (MQ=255)


    tttATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTTGCTCAAATATcccccgg                                                                                                       >  1:4054532/1‑97 (MQ=255)


    tttATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCgggg                                                                                                       >  1:6178934/1‑101 (MQ=255)


    tttATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCgggg                                                                                                       >  1:4496365/1‑101 (MQ=255)


    tttATCCCAAGAAAAAGCAGCGGCTTGACCCGAAGGCCTTG.TTTTGATGGAACAAGAAACGCCGAACCG.CCACCTTTCACCTTGGCTCAAATATCCCgggg                                                                                                       >  1:2541006/1‑101 (MQ=255)


      tATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCgggggc                                                                                                     >  1:2687572/1‑100 (MQ=255)


      tATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCcggggg                                                                                                     >  1:1842727/1‑100 (MQ=255)


      tATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGt                                                                                                     >  1:5545492/1‑101 (MQ=255)


       aTCCCAAGAAAAGGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTc                                                                                                    <  2:4861815/101‑1 (MQ=255)


       aTCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTc                                                                                                    >  1:3273849/1‑101 (MQ=255)


       aTCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCCGGGGTc                                                                                                    >  1:4165266/1‑101 (MQ=255)


        tCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGGACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTcc                                                                                                   >  2:3975456/1‑101 (MQ=255)


        tCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTcc                                                                                                   <  1:5302157/101‑1 (MQ=255)


        tCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTcc                                                                                                   <  1:23021/101‑1 (MQ=255)


        tCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTcc                                                                                                   >  2:1117700/1‑101 (MQ=255)


        tCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTcc                                                                                                   <  2:2328803/101‑1 (MQ=255)


         cccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCg                                                                                                  <  2:4435201/101‑1 (MQ=255)


         cccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCg                                                                                                  <  1:1095473/101‑1 (MQ=255)


         cccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCg                                                                                                  >  1:3529884/1‑101 (MQ=255)


         cccAAGAAAAAGCACCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCg                                                                                                  <  1:81896/101‑1 (MQ=39)


          ccAAGAAAAAGCAGCGGCTTGCCCCGAAAGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCgg                                                                                                 >  2:423304/1‑101 (MQ=38)


           cAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCggg                                                                                                <  2:5097443/101‑1 (MQ=255)


            aaGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCgggg                                                                                               <  2:4721530/101‑1 (MQ=255)


            aaGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCgggg                                                                                               <  1:6204747/101‑1 (MQ=255)


            aaGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCgggg                                                                                               <  1:3149099/101‑1 (MQ=255)


              gAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGc                                                                                             >  1:2246510/1‑101 (MQ=255)


              gAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGc                                                                                             >  1:6787536/1‑101 (MQ=255)


               aaaaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCg                                                                                            >  2:7685529/1‑101 (MQ=255)


                aaaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCgg                                                                                           >  2:3088828/1‑101 (MQ=255)


                aaaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCgg                                                                                           >  1:8966266/1‑101 (MQ=255)


                aaaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCgg                                                                                           >  1:7845463/1‑101 (MQ=255)


                 aaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCggg                                                                                          >  2:4695932/1‑100 (MQ=38)


                 aaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGa                                                                                          >  2:6590825/1‑101 (MQ=255)


                 aaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGATCAAATATCCCGGGGGTCCGGGGGCGGa                                                                                          >  1:6403777/1‑101 (MQ=38)


                  aaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCgggg                                                                                         >  1:2277715/1‑99 (MQ=38)


                  aaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..g                                                                                       >  2:882043/1‑101 (MQ=255)


                     cagcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..ccc                                                                                  >  2:8215895/1‑101 (MQ=255)


                     cagcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..ccc                                                                                  >  1:8211260/1‑101 (MQ=255)


                     cagcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..ccc                                                                                  >  1:767092/1‑101 (MQ=255)


                      agcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccc                                                                                 <  2:753010/101‑2 (MQ=37)


                      agcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccc                                                                                 >  1:5106648/1‑100 (MQ=37)


                       gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..ccccc                                                                                <  2:2869756/101‑3 (MQ=37)


                       gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..ccccc                                                                                <  1:587127/101‑3 (MQ=37)


                       gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..ccccc                                                                                <  2:5437737/101‑3 (MQ=37)


                       gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..ccccc                                                                                <  2:6178695/101‑3 (MQ=37)


                       gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..ccccc                                                                                <  1:1773115/101‑3 (MQ=37)


                        cGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccg                                                                               <  2:472920/101‑4 (MQ=37)


                        cGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccg                                                                               <  1:8844289/101‑4 (MQ=37)


                        cGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccg                                                                               <  2:1656953/101‑4 (MQ=37)


                         ggCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccgg                                                                              <  1:8015490/101‑5 (MQ=25)


                          gCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggc                                                                             >  2:6016404/1‑96 (MQ=25)


                             tGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggcggg                                                                          >  2:1883161/1‑93 (MQ=21)


                              gCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggcgggg                                                                         >  2:2098289/1‑92 (MQ=21)


                              gCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggcgggg                                                                         >  2:1882937/1‑92 (MQ=21)


                               ccccGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAACCGCCC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..cccccggcgggtc                                                                        <  1:7356805/101‑11 (MQ=21)


                                                            gAACCGCCGACCCCCCC.CCTTTCCCCTGGGCTAAAATCTCCGGGGGGTCCGGGGGCGGACCC..CCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAacac                                         <  1:5525199/101‑1 (MQ=0)


                                                               aCGCCGACCCGCCC.CCTTTCGCCTTGGCTCAAATATCCGGGGGGTCGGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACAcccc                                      <  1:1116316/101‑1 (MQ=2)


                                                               aCGCCGACCCGCCC.CCTTTCCCCTGGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACAcccc                                      <  2:1511626/101‑1 (MQ=2)


                                                                cGCCGAACCGCCC.CCTTTCACCTGGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCa                                     <  2:4988315/101‑1 (MQ=2)


                                                                    gAACCGCCC.CCTTCCACCTTGGCTCAAATATCCCGGGGCTCCGGGGCCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAgcgc                                 <  2:2687490/101‑1 (MQ=2)


                                                                     accccccc.ccTTTCCCCTTGGCTCAAATACCCGGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGcc                                <  1:6858652/95‑1 (MQ=0)


                                                                       ccgccc.ccTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCac                              <  2:6501987/97‑1 (MQ=2)


                                                                        cgccc.ccTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCacc                             <  1:2895984/98‑1 (MQ=2)


                                                                        ccccc.ccTTCCACCTTGGCTCAAATACCCCGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCacc                             <  2:8665780/98‑1 (MQ=2)


                                                                          ccc.ccTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCaccga                           <  2:1703336/100‑1 (MQ=9)


                                                                            ccccgctccccTTGTCTCGAATCCCCCGGTGCTCCGGGGGCGCA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCaccgac                          <  2:7349847/92‑1 (MQ=2)


                                                                               cTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCAccgaccga                       <  2:4852213/101‑1 (MQ=14)


                                                                                ttgcaccggggCTCAAATCTCCGGGGGGTCGGGGGGCGGA..G..CCCCGG.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACcgaccgac                      <  1:2710784/92‑1 (MQ=2)


                                                                                  tccccTGGGCTCAAATACCCGGGGGGCCGGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACtt                    <  1:871499/98‑1 (MQ=2)


                                                                                  tCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACtt                    <  2:2158383/101‑1 (MQ=14)


                                                                                  tCACCTGGCCACAAATACCCGGGGGGCCGGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACtt                    <  2:519103/101‑1 (MQ=2)


                                                                                   cACCTGGGCTAAAATACCCCGGGGGTCCGGGGGCGGC..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTg                   <  2:4622402/101‑1 (MQ=9)


                                                                                    cccTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGc                  <  2:5545285/100‑1 (MQ=14)


                                                                                    cccTTGGCTCAAATACCCGGGGGGTCGGGGGGCGGAC.C..CCC..GTGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGc                  <  1:423312/100‑1 (MQ=9)


                                                                                       ttGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGAc               <  1:8669472/101‑1 (MQ=14)


                                                                                        tGGCTCAAATACCCCGGGGGTCCGGGGGCGGACCC..CCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACg              <  1:1615606/101‑1 (MQ=9)


                                                                                           cTCAAATATCCCGGGGGTCCGGGGGCGGA..G..CCC..C.CGGCGGGGGGCCCAGGGGCAAGCCCGCGGCGAAACACCCCCCCGCCCCCGCCCCACCCGCGCCGGcc           >  2:2888435/1‑101 (MQ=2)


                                                                                               aatcgcccGGGGGCCGGGGGGCGGG..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTc       <  1:1925722/96‑1 (MQ=9)


                                                                                               aaTACCCCGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTc       <  2:5698457/101‑1 (MQ=12)


                                                                                                atatCCCGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTcg      <  2:5877156/101‑1 (MQ=17)


                                                                                                atagCCCGGGGGTCGGGGGGCGGG..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTcg      <  1:9071844/101‑1 (MQ=12)


                                                                                                 taccccGGGGGTCCGGGGGCGGA..GCCCCC..G.GCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTcgc     <  2:8807057/98‑1 (MQ=12)


CGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAACCG.CC.CCTTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGA..G..CCC..G.CCGGGTCTCCTCCGGGAGCAAGGCCGAGGCGAGACACCCCAGCGCCACCGACCGACTTGCGACGGCCTGTCGCGCA  >  NC_014034/2185857‑2186055

Base quality scores:


ATCG

< 3 ≤


ATCG

< 17 ≤


ATCG

< 26 ≤


ATCG

< 33 ≤


ATCG

< 40 ≤


ATCG