| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,395,890 | C→T | 7.1% | intergenic (+702/‑229) | RCAP_rcc01306 → / → RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,395,890 | 0 | C→T | 7.1% | 79.3 0.0 ‑0.0 | 535 | intergenic (+702/‑229) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (18/20): ref base (237/259): total (255/280) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.86e-01 | ||||||||||
Only 100 of 577 total aligned reads displayed.
CGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCGGGGGCGTGGAT > NC_014034/1395790‑1395990
|
cGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAg.c > 2:8139903/1‑101 (MQ=255)
aaaCCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAg.cgc < 2:4827365/101‑1 (MQ=255)
aCCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.cgcc.g < 1:6836705/101‑1 (MQ=255)
gcggggTGAGTCCCCAGTGATAGACGCCGTGGACCTCCCCCCCCCCGCGGGGCAGGGCATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.TCG.Ca < 2:5973596/101‑1 (MQ=255)
gcggcgTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.Ca > 1:5935295/1‑101 (MQ=255)
gTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGc > 1:7607897/1‑101 (MQ=255)
tGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCt > 1:5588667/1‑101 (MQ=255)
gAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTc > 2:5832761/1‑101 (MQ=255)
gAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTc > 1:2930974/1‑101 (MQ=255)
gAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CGATCGCCTCCGG...TC..GAG.CGCC.GCG.CA.GTGGccc > 1:4560226/1‑99 (MQ=255)
aGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTcc > 2:6761381/1‑101 (MQ=255)
gCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTcccccc < 2:3323429/101‑1 (MQ=255)
gCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTcccccc < 2:4682585/101‑1 (MQ=255)
gCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTcccccc < 1:4971427/101‑1 (MQ=255)
ccAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCcg < 2:3773256/101‑1 (MQ=255)
tGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCggg > 2:7763331/1‑101 (MQ=255)
tGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCggg > 1:423853/1‑101 (MQ=255)
gctAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCgggg > 1:5474784/3‑101 (MQ=255)
gATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCCC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCgggg < 1:1221726/101‑1 (MQ=255)
aTAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCggggg > 2:7974560/1‑101 (MQ=255)
aGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCg > 1:832075/1‑101 (MQ=255)
aGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCg > 1:1412273/1‑101 (MQ=255)
aGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCg > 1:8607255/1‑101 (MQ=255)
aGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GGCGCTCCCCCCGCGGGGGCg > 2:8822694/1‑101 (MQ=255)
aGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...CC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCg > 2:2747556/1‑101 (MQ=255)
gACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGt < 1:563711/101‑1 (MQ=255)
gCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGa > 1:3557867/1‑101 (MQ=255)
gCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGa < 2:6275556/101‑1 (MQ=255)
cggcccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGt > 1:514542/9‑101 (MQ=2)
caacctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGAt < 2:8312240/93‑1 (MQ=9)
cGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGGGGATc > 2:4206457/1‑101 (MQ=255)
aacctatgTCGCGCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATc < 2:1233093/94‑1 (MQ=9)
gTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCg > 2:1767133/1‑101 (MQ=255)
gTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:2075981/101‑1 (MQ=255)
cccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGa > 2:2545548/6‑101 (MQ=0)
acctatgTCGCTCGCCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:6967103/95‑1 (MQ=9)
acctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGGGGATCg > 2:7689923/7‑101 (MQ=9)
cgcccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCAT.GAATTC.A...TC..GAG.CGCCATCGAGC.GTCGCTCCCCCCGCGGGGGCGTGGATc < 1:4870085/97‑1 (MQ=2)
ggACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa > 1:3759071/1‑101 (MQ=255)
gcccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCAT.GAATTC.A...TC..GAG.CGCCATCGAGC.GTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:1003239/98‑1 (MQ=2)
ctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGaa > 1:6130010/5‑101 (MQ=9)
cggcctCGCTCCCCCGCGGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATc < 2:7357145/96‑1 (MQ=2)
cggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATc < 1:3355431/98‑1 (MQ=2)
ggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCg < 2:5409195/99‑1 (MQ=2)
gcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCGa > 2:5277187/2‑101 (MQ=2)
aCGTCGCTCCCCCCGCGGGGGCGTGGATAGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc > 1:8080304/1‑101 (MQ=255)
aCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc < 2:2230836/101‑1 (MQ=255)
tgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CTGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAca < 1:6569623/100‑2 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGa > 2:3092871/1‑101 (MQ=255)
tCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAt < 2:1896981/101‑1 (MQ=9)
cGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATg > 2:295976/1‑101 (MQ=255)
gttgcggcggcgGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGc > 2:5622341/10‑101 (MQ=2)
gCTCCCCGCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGc < 1:1648682/101‑1 (MQ=255)
gCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGc > 1:2618497/1‑101 (MQ=9)
gCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGc < 2:1290315/101‑1 (MQ=9)
cTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGG...TCTTCTGTTGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGGGTGGGTCGagcaccc > 1:8942870/1‑95 (MQ=0)
cTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAACAATGCg > 2:4035197/1‑101 (MQ=9)
tcgccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCgg < 1:3137533/98‑2 (MQ=9)
tcaccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCgg < 2:3487612/98‑2 (MQ=9)
tCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGt > 1:7898144/1‑101 (MQ=255)
ccccccGCGGGGGCGTGGATCGAAACTTCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGtt < 2:5102342/101‑1 (MQ=255)
caccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggc > 2:1498702/3‑99 (MQ=9)
cccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcg < 1:1940832/101‑4 (MQ=9)
accccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcg > 2:8566572/2‑98 (MQ=9)
accccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcg > 1:8700168/2‑98 (MQ=9)
ccccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCa < 2:8999403/101‑1 (MQ=255)
ccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcgcgg < 2:1007300/101‑7 (MQ=2)
cgGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGcc < 2:6633461/101‑1 (MQ=255)
gggggCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcgcggtcct < 1:7210968/101‑11 (MQ=2)
gggggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCt > 1:3905723/1‑101 (MQ=255)
gggggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCt > 2:635560/1‑101 (MQ=255)
ggggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTa > 1:4401505/1‑101 (MQ=255)
gggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTAc > 2:6967809/1‑101 (MQ=255)
gTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCg > 1:5345701/1‑101 (MQ=255)
gTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCg > 2:2088928/1‑101 (MQ=255)
gTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCg > 1:7419266/1‑101 (MQ=255)
gTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCg > 2:6441795/1‑101 (MQ=255)
tGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCgg > 2:4382781/1‑101 (MQ=255)
ggATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCggg > 1:4645542/1‑101 (MQ=255)
aTCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGCTCGAAACGATGCGTTCATGGCCTACGTCGGGcg < 1:6446786/101‑2 (MQ=255)
cGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGt > 2:8506744/1‑101 (MQ=255)
cGAAACTGCG.CCGC.CTATCGCATCCGG...GA..GGG.CGCC.GCG.CA.TTCGCTCCCCCCGCGGGGGCGTGGATGGAGACGATCCGCTCCTCCCCCACGGCGGGCAgg > 1:9099135/1‑100 (MQ=19)
gAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTg > 2:5500932/1‑101 (MQ=255)
gAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTg < 1:30869/101‑1 (MQ=255)
gAAACGGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTg < 2:6139891/101‑1 (MQ=255)
gcg.cCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTgg < 2:7138080/101‑1 (MQ=255)
gcg.cCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTgg < 1:2747638/101‑1 (MQ=255)
cg.ccgc.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGt < 1:1812374/101‑1 (MQ=255)
cTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTcc > 2:4915939/1‑101 (MQ=255)
aTCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTcccc > 1:673558/1‑101 (MQ=255)
cGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTcccccc > 1:7811835/1‑101 (MQ=255)
aTCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCcgcg > 1:2292651/1‑101 (MQ=255)
aTCCGG...TC..GAG.CCCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGGCGCTCCCCCcgcg > 1:6655809/1‑101 (MQ=255)
ccGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCggg > 1:8407556/1‑101 (MQ=255)
cGG...TC..GAG.CCCC.CCG.GA.GGCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCgggg < 2:2397569/101‑1 (MQ=38)
gg...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCggggg > 1:4078010/1‑101 (MQ=255)
gg...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCggggg > 2:2678779/1‑101 (MQ=255)
c..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCGGGGGCgg > 2:6477376/1‑100 (MQ=255)
c..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCGGGGGCGt > 1:629841/1‑101 (MQ=255)
aG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCGGGGGCGTgg > 1:3675910/1‑101 (MQ=255)
|
CGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCGGGGGCGTGGAT > NC_014034/1395790‑1395990
Base quality scores:
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|