Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_014034 1,434,390 T→C 21.5% intergenic (‑169/‑789) RCAP_rcc01334 ← / → RCAP_rcc01335 hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0140341,434,3900T→C21.5% 297.2 ‑0.3 ‑0.4537intergenic (‑169/‑789)RCAP_rcc01334/RCAP_rcc01335hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Reads supporting (aligned to +/- strand):  new base (53/62):  ref base (187/234):  total (241/296)
Fisher's exact test strand distribution p-value = 7.52e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.36e-01

Only 100 of 570 total aligned reads displayed.

ATGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCC  >  NC_014034/1434290‑1434490
                                                                                                        |                                                                                                     
  gCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGctct                                                                                                     <  1:848547/101‑1 (MQ=255)
   cACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTg                                                                                                    >  2:907425/1‑101 (MQ=255)
   cACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTg                                                                                                    >  2:1431064/1‑101 (MQ=255)
   cACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTg                                                                                                    >  1:586690/1‑101 (MQ=255)
    aCCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGc                                                                                                   >  1:7036227/1‑101 (MQ=255)
       gCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTc                                                                                                >  2:182758/1‑101 (MQ=255)
       gCTTACCGTCGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTc                                                                                                <  2:5265593/101‑1 (MQ=255)
        cTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCa                                                                                               <  1:2656090/101‑1 (MQ=255)
        cTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCa                                                                                               >  2:3171877/1‑101 (MQ=255)
          tACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACg                                                                                             <  1:8741047/101‑1 (MQ=255)
            ccGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.Gc                                                                                          <  2:7874280/101‑1 (MQ=255)
             cGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCt                                                                                         >  2:6924855/1‑101 (MQ=255)
             cGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCt                                                                                         >  1:7597707/1‑101 (MQ=255)
               tGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGc                                                                                       <  1:7390107/101‑1 (MQ=255)
                ggATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCg                                                                                      >  2:2283936/1‑101 (MQ=255)
                   tCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCa                                                                                   <  1:4466337/101‑1 (MQ=255)
                   tCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCa                                                                                   <  2:5349978/101‑1 (MQ=255)
                    cGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCac                                                                                  >  1:2126336/1‑100 (MQ=255)
                     gAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAAc                                                                                 >  2:2656690/1‑101 (MQ=255)
                        aCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGGCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCCCG.GCTGCGTCAACCtt                                                                              >  1:6568961/1‑101 (MQ=255)
                        aCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGCCGCTCCCCCCGCGGCGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCtt                                                                              >  1:9000528/1‑101 (MQ=255)
                          aGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGt                                                                            >  1:1845077/1‑101 (MQ=255)
                           ggCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTc                                                                           >  2:5893551/1‑101 (MQ=255)
                           ggCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTc                                                                           >  1:6014864/1‑101 (MQ=255)
                              tgctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCt                                                                        >  1:1148686/1‑101 (MQ=255)
                               gctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCACCCTTgcgggtc                                                                       >  2:8940636/1‑95 (MQ=255)
                               gctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTc                                                                       >  1:234536/1‑101 (MQ=255)
                               gctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTc                                                                       <  2:7577776/101‑1 (MQ=255)
                               gctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTc                                                                       >  2:7051810/1‑101 (MQ=255)
                                  ttGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTcccc                                                                    <  2:8429031/101‑1 (MQ=255)
                                              ccTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGt                                                        <  2:40850/101‑1 (MQ=255)
                                               cTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTg                                                       <  2:3630391/101‑1 (MQ=255)
                                                 ggtCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGa                                                     <  1:3980936/99‑1 (MQ=255)
                                                 gATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGa                                                     >  1:4600496/1‑101 (MQ=255)
                                                  aTCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGAt                                                    <  1:3032801/101‑1 (MQ=255)
                                                    ccTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGCTCg                                                  >  2:3744877/1‑101 (MQ=255)
                                                    ccTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                  <  1:4335561/101‑1 (MQ=255)
                                                    ccTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                  <  2:2195447/101‑1 (MQ=255)
                                                     ggctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAt                                                    <  2:6067518/94‑1 (MQ=2)
                                                     ggctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGAt                                                    <  2:6475276/94‑1 (MQ=2)
                                                     ctgctgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                 <  2:234533/101‑1 (MQ=255)
                                                      tgctgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                                >  1:5676098/1‑101 (MQ=255)
                                                      tgctgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                                <  1:5260915/101‑1 (MQ=255)
                                                      gctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATc                                                   >  2:6573099/7‑101 (MQ=2)
                                                      gctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATc                                                   <  1:3269516/95‑1 (MQ=2)
                                                       gctgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                               >  2:6210411/1‑101 (MQ=255)
                                                       ctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                  <  2:4874240/96‑1 (MQ=2)
                                                        gatcttCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAac                                              <  1:8201281/96‑1 (MQ=255)
                                                         tgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAaca                                             >  1:3536847/1‑101 (MQ=255)
                                                         atcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                                <  1:7186881/98‑1 (MQ=2)
                                                         atcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGGGGATCGaa                                                >  2:1729205/4‑101 (MQ=2)
                                                          gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac                                            >  2:5639638/1‑101 (MQ=255)
                                                          gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac                                            <  2:5781825/101‑1 (MQ=255)
                                                          gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac                                            <  1:2006417/101‑1 (MQ=255)
                                                          gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac                                            <  1:3769151/101‑1 (MQ=255)
                                                           cgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAac                                              >  1:7677790/2‑101 (MQ=2)
                                                           cgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAac                                              >  2:2982106/2‑101 (MQ=2)
                                                           cgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GGTTCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAac                                              <  2:3947337/100‑1 (MQ=2)
                                                            gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacg                                             <  1:5556110/101‑2 (MQ=2)
                                                            gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacg                                             >  2:5418955/1‑100 (MQ=2)
                                                            gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACgg                                          <  1:6222669/101‑1 (MQ=255)
                                                            gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACgg                                          <  2:1148668/101‑1 (MQ=255)
                                                            gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACgg                                          <  1:7824828/101‑1 (MQ=255)
                                                             tCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCCACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGa                                         <  2:4427349/101‑1 (MQ=255)
                                                              cGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgct                                           >  1:4513134/1‑98 (MQ=2)
                                                              cGCTCCCCCCGCAGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgct                                           <  1:9117689/101‑4 (MQ=2)
                                                               gCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctg                                          >  1:1600412/1‑97 (MQ=2)
                                                               gCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt                                       >  2:79879/1‑101 (MQ=255)
                                                               gCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt                                       <  2:1530220/101‑1 (MQ=255)
                                                                cTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgc                                         >  2:188997/1‑96 (MQ=2)
                                                                cTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgc                                         <  1:6906154/101‑6 (MQ=2)
                                                                cTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGCTTg                                      >  2:7291494/1‑101 (MQ=255)
                                                                cTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTg                                      <  2:7166702/101‑1 (MQ=255)
                                                                  ccccccGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctg                                       >  1:8569130/1‑94 (MQ=2)
                                                                  ccccccGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCa                                    >  1:7881878/1‑101 (MQ=255)
                                                                   cccccGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCAt                                   <  2:8590553/101‑1 (MQ=255)
                                                                    ccccGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATg                                  <  1:6428934/101‑1 (MQ=255)
                                                                    ccccGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATg                                  <  1:4948623/101‑1 (MQ=255)
                                                                     cccGCGGGGGCGTGGATCGAAACGGG..TCGAAGACCTGCTTGACGCGCTGGATCTGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctgaca                                    <  2:2097503/101‑11 (MQ=0)
                                                                         cgGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc                             >  1:3363621/1‑101 (MQ=255)
                                                                          gggggCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCg                            <  2:3455424/101‑1 (MQ=255)
                                                                          gggggCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCg                            >  2:1055954/1‑101 (MQ=255)
                                                                          ctgggCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCg                            <  2:7678107/99‑1 (MQ=255)
                                                                            gggGGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAg                          >  1:8805415/1‑101 (MQ=255)
                                                                                gTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGAc                      <  2:4965219/101‑1 (MQ=255)
                                                                                 tGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa                     <  1:5397863/101‑1 (MQ=255)
                                                                                  ggATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAg                    >  2:47265/1‑101 (MQ=255)
                                                                                   gATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAgg                   <  1:1413945/101‑1 (MQ=255)
                                                                                      cGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt                >  1:107803/1‑101 (MQ=255)
                                                                                      cGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt                <  2:287973/101‑1 (MQ=255)
                                                                                      cGAAAC..G..TCGCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt                <  2:3301714/101‑1 (MQ=255)
                                                                                       gAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt               >  1:4819525/1‑101 (MQ=255)
                                                                                       gAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt               >  1:6301726/1‑101 (MQ=255)
                                                                                        aaaC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTg              <  1:79879/101‑1 (MQ=255)
                                                                                         aaC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGc             <  2:8805010/101‑1 (MQ=255)
                                                                                          aC..G..ACTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCATTGcg            >  2:823431/1‑100 (MQ=255)
                                                                                           c..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACAGATTGCATGGCGCCGAGGGACAGGCTTTGCAg           >  2:6750936/1‑101 (MQ=255)
                                                                                                 tctcCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTc         <  1:4099684/101‑1 (MQ=255)
                                                                                                  ctcCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg        >  2:6350214/1‑101 (MQ=255)
                                                                                                        tctGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccc  <  2:4534157/101‑1 (MQ=255)
                                                                                                        |                                                                                                     
ATGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCGCTCTGCTTCACG.GCTGCGTCAACCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCC  >  NC_014034/1434290‑1434490

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG