| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,434,409 | A→T | 20.8% | intergenic (‑188/‑770) | RCAP_rcc01334 ← / → RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,434,409 | 0 | A→T | 20.8% | 0.0 ‑0.8 ‑0.6 | 519 | intergenic (‑188/‑770) | RCAP_rcc01334/RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator |
| Reads supporting (aligned to +/- strand): new base (50/58): ref base (173/237): total (223/296) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.47e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.49e-01 | ||||||||||
Only 100 of 548 total aligned reads displayed.
TCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGA > NC_014034/1434309‑1434509
|
cGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCaa > 2:1041980/1‑101 (MQ=255)
aaaCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCAAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAAcc > 2:6597241/1‑101 (MQ=255)
aCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCtt < 2:7867632/101‑1 (MQ=255)
cAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..g < 1:1976671/101‑1 (MQ=255)
tgctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCt < 2:4574614/101‑1 (MQ=255)
tgctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCt < 2:2307424/101‑1 (MQ=255)
gctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTc > 2:7051810/1‑101 (MQ=255)
ctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTcc > 1:3455528/1‑101 (MQ=255)
ttGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTGTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTcccc < 1:8199213/101‑1 (MQ=255)
tGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTccccc < 1:6802963/101‑1 (MQ=255)
ggCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCcg < 2:3967990/101‑1 (MQ=255)
gAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCggg > 1:9083024/1‑101 (MQ=255)
acacCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCggggg > 1:6464498/1‑101 (MQ=255)
acacCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCCCggggg > 1:7946521/1‑101 (MQ=255)
cacCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGc < 1:1370762/101‑1 (MQ=255)
cacCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGc < 1:4806621/101‑1 (MQ=255)
gATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGa < 1:2299263/101‑1 (MQ=255)
aTCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGAt < 2:6108467/101‑1 (MQ=255)
aTCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGAt > 2:1912120/1‑101 (MQ=255)
cgggctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTgg < 2:1729939/92‑1 (MQ=2)
cgggctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTgg < 2:3512227/92‑1 (MQ=2)
cgggctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTgg < 2:2351921/92‑1 (MQ=2)
cgggctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTgg < 1:1142919/92‑1 (MQ=2)
ccTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCg < 2:4788773/101‑1 (MQ=255)
ccTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCg < 1:4491071/101‑1 (MQ=255)
ctgctgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGa > 2:9182526/1‑101 (MQ=255)
gctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATc > 2:3689168/7‑101 (MQ=2)
gctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATc > 1:2038027/7‑101 (MQ=2)
ctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCg < 1:178397/96‑1 (MQ=2)
ctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCg < 2:1204716/96‑1 (MQ=2)
tatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGa < 1:8486400/97‑1 (MQ=2)
ctgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAac < 1:1592449/101‑1 (MQ=255)
tgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAaca > 1:3307249/1‑101 (MQ=255)
tgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAaca > 1:8311215/1‑101 (MQ=255)
atcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGaa < 1:7186881/98‑1 (MQ=2)
tcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGaaa < 2:184020/99‑1 (MQ=2)
gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacac < 2:5156404/101‑1 (MQ=255)
gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacac > 2:5639638/1‑101 (MQ=255)
gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacac < 2:5781825/101‑1 (MQ=255)
cgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAac > 1:7677790/2‑101 (MQ=2)
cgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGGGGATCGAAac > 2:2982106/2‑101 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacg > 2:5418955/1‑100 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacg < 1:5556110/101‑2 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACgg < 1:7824828/101‑1 (MQ=255)
cGCTCCCCCCGCGGGGGCGTGGATGGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgct < 2:648237/101‑4 (MQ=2)
cGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgct > 1:7389201/1‑98 (MQ=2)
gCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt < 2:8781499/101‑1 (MQ=255)
gCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt > 2:79879/1‑101 (MQ=255)
gCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt < 1:4052469/101‑1 (MQ=255)
cTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgc > 2:4191838/1‑96 (MQ=2)
tCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgct < 1:7004577/101‑7 (MQ=2)
tCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTgt > 2:3157882/1‑100 (MQ=255)
tCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGc > 2:3283867/1‑101 (MQ=255)
ccccccGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctg > 1:4967330/1‑94 (MQ=2)
ccccccGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctg > 1:8569130/1‑94 (MQ=2)
ccccccGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctg > 2:2698435/1‑94 (MQ=2)
ccccccGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctg < 2:5301059/101‑8 (MQ=2)
ccccGCGGGGGCGTGGATCGAAAC..TTGTCTGACGCGCTCATCA.GC.ACGTCAAGATTCAGT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCggcaaggac > 2:720983/1‑94 (MQ=37)
ccccGCGGGGGCGTGGATCGAAAC..TTGTCTGACGCGCTCATCA.GC.ACGTCAAGATTCAGT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCggcaacgac < 1:8791791/101‑8 (MQ=37)
cccGCGGGGGCGTGGATCGAAACGGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctgaca < 1:3693557/101‑11 (MQ=0)
ggCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.TGCTCCCCCCGCGGGGGCGTCGATCGAAACACGGATTGCATGGCGCCGAgg > 2:1599192/1‑101 (MQ=255)
cGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa < 1:5849216/101‑1 (MQ=255)
cGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa < 1:4460719/101‑1 (MQ=255)
tGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa < 1:5397863/101‑1 (MQ=255)
tGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa < 1:5164897/101‑1 (MQ=255)
tGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa < 2:6752850/101‑1 (MQ=255)
tGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa > 1:414131/1‑101 (MQ=255)
ggATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAg > 2:4482443/1‑101 (MQ=255)
cGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt < 2:9048746/101‑1 (MQ=255)
cGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt > 1:3112023/1‑101 (MQ=255)
cGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt > 1:6277393/1‑101 (MQ=255)
gAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt < 2:3895339/101‑1 (MQ=255)
gAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt > 2:1476317/1‑101 (MQ=255)
gAAAC..GGCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt < 2:1110265/101‑1 (MQ=255)
aaaC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTg < 2:6924661/101‑1 (MQ=255)
aaC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGc > 1:2610157/1‑101 (MQ=255)
aC..GACTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCATTGcg > 2:823431/1‑100 (MQ=255)
ccGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCt < 1:4584629/101‑1 (MQ=255)
cGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTc < 2:8890638/101‑1 (MQ=255)
cGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTc > 2:8573432/1‑101 (MQ=255)
gCTCTGCTTCAAG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcc < 2:765171/101‑1 (MQ=255)
ctctGCTTCACG.GCTGCGTCAACCTT..GTCCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcc < 1:8941057/101‑1 (MQ=255)
tctGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccc > 2:7315799/1‑101 (MQ=255)
ctGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccccc < 2:8498379/101‑1 (MQ=255)
ctGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccccc < 1:571481/101‑1 (MQ=255)
tGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccccc < 2:6014629/101‑1 (MQ=255)
tGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccccc > 1:632138/1‑101 (MQ=255)
cTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcgc > 1:6011364/1‑101 (MQ=255)
ttCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcgcg > 2:6329115/1‑101 (MQ=255)
tCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCgg < 1:7587921/101‑1 (MQ=255)
cG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCggggg > 2:2142165/1‑101 (MQ=255)
g.gCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGc < 1:1055972/101‑1 (MQ=40)
gCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCg > 2:220581/1‑101 (MQ=40)
tCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATc < 2:7575545/101‑1 (MQ=33)
tCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATc < 2:2845532/101‑1 (MQ=33)
cAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGagat > 1:3824700/1‑98 (MQ=17)
cAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCg < 2:4913378/101‑1 (MQ=32)
cAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCg > 2:637929/1‑101 (MQ=32)
cAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:2846586/101‑1 (MQ=32)
aaCCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGa > 1:6194166/1‑101 (MQ=31)
|
TCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCGCTCTGCTTCACG.GCTGCGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGA > NC_014034/1434309‑1434509
Base quality scores:
ATCG
< 3 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|