| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,253,894 | +CCCC | 100% | intergenic (+52/+39) | RCAP_rcc01181 → / ← hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,253,894 | 1 | .→C | 100.0% | 58.6 | 42 | intergenic (+52/+39) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (39/2): ref base (0/1): total (39/3) | ||||||||||
| * | NC_014034 | 1,253,894 | 2 | .→C | 100.0% | 58.6 | 42 | intergenic (+52/+39) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (39/2): ref base (0/1): total (39/3) | ||||||||||
| * | NC_014034 | 1,253,894 | 3 | .→C | 100.0% | 58.7 | 42 | intergenic (+52/+39) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (39/2): ref base (0/1): total (39/3) | ||||||||||
| * | NC_014034 | 1,253,894 | 4 | .→C | 100.0% | 58.7 | 42 | intergenic (+52/+39) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (39/2): ref base (0/1): total (39/3) | ||||||||||
CTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGAG....C....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCG > NC_014034/1253795‑1253994
||||
cTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTACATACCTCGGGGGTGCG.....GGGg....c < 1:3287476/101‑1 (MQ=255)
cTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c < 2:5495142/101‑1 (MQ=255)
tGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....g < 2:2879266/101‑1 (MQ=255)
gggCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....gg < 1:2768421/101‑2 (MQ=255)
ggCAAGCTCGGCTTCCAGGCCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....gga < 1:4407218/101‑3 (MQ=255)
cAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagc < 1:604756/101‑5 (MQ=255)
cAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagc > 2:4540525/1‑97 (MQ=255)
cAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagc < 2:2296930/101‑5 (MQ=255)
cAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagc > 2:4237004/1‑97 (MQ=255)
cAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagc > 2:5655651/1‑97 (MQ=255)
aaGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagcc < 2:2659941/101‑6 (MQ=255)
aaGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagcc > 2:4611253/1‑96 (MQ=255)
aaGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGGGCG.....GGGg....c....ggagcc > 1:5707759/1‑96 (MQ=255)
aaGCTCGGCTTCCAGACCGGCTGAGCCTTGGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagcc < 1:1623746/101‑6 (MQ=38)
aGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagccc > 1:5609830/1‑95 (MQ=255)
aGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagccc < 2:184310/101‑7 (MQ=255)
gCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagcccc > 1:867335/1‑94 (MQ=255)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAACCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagccccc < 2:3528109/101‑9 (MQ=38)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....gggcccacc > 2:1269995/1‑93 (MQ=255)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagccccc < 2:5185018/101‑9 (MQ=255)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagcccca < 1:620523/101‑9 (MQ=255)
tCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagcccccg > 2:650778/1‑92 (MQ=38)
tCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagcccccg > 1:3619821/1‑92 (MQ=38)
tCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGGg....c....ggagcccccg > 1:3367476/1‑92 (MQ=38)
ggCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCg > 2:5356405/1‑101 (MQ=9)
ggCAAAAAAACCCGACCCCGCCCCGCTCTCATCTTCCCCTAAATCCCTGGGGGGTGGGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCg < 2:5065266/101‑1 (MQ=2)
aaaTAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAAt > 1:2926960/1‑101 (MQ=9)
aaTAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATc > 2:3570127/1‑101 (MQ=9)
aaaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc > 1:5486119/1‑101 (MQ=9)
aaaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc > 1:5167136/1‑101 (MQ=9)
aaaCCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc > 2:2042639/1‑101 (MQ=9)
ccGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCa > 1:2946857/1‑101 (MQ=9)
cGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCAc > 1:525419/1‑101 (MQ=9)
cGACCCCCCCCCTCTCTCATCTTGCCCTAAATCCCCGGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCAc < 2:870099/101‑1 (MQ=2)
gATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACg > 2:1501532/1‑101 (MQ=9)
gATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACg > 2:1658746/1‑101 (MQ=9)
gATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACg > 1:1645515/1‑101 (MQ=9)
tCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGc > 1:4579903/1‑101 (MQ=9)
cccgccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCt > 2:2974796/1‑101 (MQ=9)
ccgccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGGAATCCTCTCACGCCtt > 1:5039673/1‑101 (MQ=9)
ccgccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCtt > 2:5771562/1‑101 (MQ=9)
ccgccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCtt > 1:1521849/1‑101 (MQ=9)
ccgccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCtt > 2:714134/1‑101 (MQ=9)
ccgccccgcTCTCATCTTGCCCTAAATACCCCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCtt > 1:5140933/1‑101 (MQ=2)
cgccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTc > 1:1668561/1‑101 (MQ=9)
cgccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGATTc > 2:4096463/1‑101 (MQ=9)
gccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTcc > 1:3676071/1‑101 (MQ=9)
gccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTcc > 2:3372749/1‑101 (MQ=9)
ccccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCa > 2:4176033/1‑101 (MQ=9)
cccgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGGTTCCAg > 2:1086953/1‑101 (MQ=9)
cgcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGtt > 2:1218679/1‑101 (MQ=9)
tctctCATCTTGCCCTAAATCCCTCGGGGGTGCGGGGGCGGAG....CCCCTGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc < 2:2245326/100‑1 (MQ=9)
gcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc > 1:2828355/1‑101 (MQ=9)
gcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc > 1:4297163/1‑101 (MQ=9)
gcTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc > 1:4844535/1‑101 (MQ=9)
ctctCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCa > 1:159353/1‑101 (MQ=9)
ctctCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCa > 2:5198937/1‑101 (MQ=9)
ctcATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTTCAGTTCAgg > 1:2858633/1‑101 (MQ=9)
tcATCTTGCCCTAAATACCTCGGGGGCGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGGGAAATCCTCTCACGGCCTCCCGTTcccga > 1:1301957/1‑97 (MQ=0)
cATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa > 1:5399624/1‑101 (MQ=9)
cATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa > 2:1531976/1‑101 (MQ=9)
cATCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa > 2:435806/1‑101 (MQ=9)
aTCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaaa > 2:4410206/1‑101 (MQ=9)
aTCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaaa > 2:667047/1‑101 (MQ=9)
aTCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaaa > 1:108653/1‑101 (MQ=9)
tCTTGCCCTAAATACCTCGGGGGTGCGGGGGCGGAGCCCCC....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAAt > 2:4333009/1‑101 (MQ=9)
g....c....gcCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCg < 1:2666199/101‑1 (MQ=255)
||||
CTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG.....GGAG....C....GCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCTCCG > NC_014034/1253795‑1253994
Base quality scores:
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|