Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_014034 | 1,721,519 | +GG | 100% | intergenic (‑414/+32) | RCAP_rcc01588 ← / ← RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | NC_014034 | 1,721,519 | 1 | .→G | 100.0% | 63.9 | 20 | intergenic (‑414/+32) | RCAP_rcc01588/RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
Reads supporting (aligned to +/- strand): new base (3/17): ref base (0/0): total (3/17) | ||||||||||
* | NC_014034 | 1,721,519 | 2 | .→G | 100.0% | 64.1 | 20 | intergenic (‑414/+32) | RCAP_rcc01588/RCAP_rcc01589 | GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein |
Reads supporting (aligned to +/- strand): new base (3/17): ref base (0/0): total (3/17) |
CGGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACC > NC_014034/1721420‑1721605
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cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACccg.ccc > 1:1199041/1‑100 (MQ=255)
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACccg.cc...g > 2:5163164/1‑101 (MQ=255)
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACccg.cc...g > 1:2245891/1‑101 (MQ=255)
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCCCGGCGCCccg.ccc > 2:2111021/1‑100 (MQ=255)
ggTTCCAAATAACTCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...cgg > 2:568191/1‑101 (MQ=255)
ggTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...cgg > 1:2310463/1‑101 (MQ=255)
ttCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...ggggg > 2:3844406/1‑99 (MQ=255)
ttCCAAATAACGCGATGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...ggggg > 2:898670/1‑99 (MQ=255)
cAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...ggggggtg > 1:2614847/1‑96 (MQ=255)
cAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...gggggctg > 1:2406131/1‑96 (MQ=255)
aaaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...ggggggtgg > 2:1780134/1‑95 (MQ=255)
aTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGGTTT.CGCCTC.GG.CTGCG.CCGGGGGGACccg.cc...gccggctgcgg > 1:4960956/1‑91 (MQ=38)
tAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...gggggcctcgcc > 2:550800/1‑92 (MQ=255)
gcgcTGCGGGCCTCCCTCCCGCTGCTTTTTTTTTTTGGCGGGTCGCTTGGGGGATTC.CGCCGG.GG.CTGCG.CCGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCg < 2:2405997/101‑1 (MQ=255)
gcgcTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CCCG.GGGCGGCGcccccc > 2:4830318/1‑100 (MQ=37)
ggCGGCCCCCCCCCCCGCTGCTTTTTTTTTTGGGCCGGCCCCGTGGGGGTTTC.CGCCCC.GG.CGGCC.CGGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGAcc < 1:2534857/100‑1 (MQ=255)
ggCGGCCCCCCCCCCCCCTGCGTTTTTTTTTTGCCCGGCCGCTTTGGGTTTTC.CCCCCC.GG.CCCCG.CCGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGAcc < 1:3520739/100‑1 (MQ=255)
ggCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCGCCC...GGGGGGCGGCCCCCCCccccccc > 2:2429678/1‑101 (MQ=25)
cccccccccccGCCGCTTTTTTTTTGTGGCCGGTCGCTTTGGGGTTTC.CGCCTC.GG.CGGCG.CCGAGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGAccccccc < 2:5078845/97‑1 (MQ=255)
ccgctgttttttTTTTTGGGCCGGTCG.CTTGGGGGTTT.CCCCCCGGG.CCGCC.CGGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGAtct < 1:3863816/92‑1 (MQ=255)
gCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CCGGGGGGCTGCGCCCCCGGCCCCCCCCCGataaatcc > 2:3351300/1‑94 (MQ=21)
gCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CCGG.GGGCTGCGCCCCCGGGCCCCCCCCCAAGAtctcc > 2:3879692/1‑100 (MQ=21)
gcgcTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CCGG.GGGCGGCGGCCCCGGACCCCCCCCCAAGAtaccacaa > 1:1644111/1‑94 (MQ=18)
tttttgttGGCCGCTCGCC.TGGGGTGTT.CCCCCC.GGCCGGCG.CCGAGCCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCt < 1:605306/95‑1 (MQ=12)
ttttgGCCCGGTCGCCTGGGGGTTTC.CCCCCC.GG.CCGCG.CCGGGGCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGa < 1:1907774/101‑1 (MQ=16)
gggcgcgtgggggTTCT.CGCCCG.GG.CCGCG.CCGCGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGc < 2:445537/92‑1 (MQ=16)
ggtgCCTTTGGGTTTT.CCCCCC.GG.CCGGGCCCGGGGCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGc < 2:3752836/98‑1 (MQ=16)
gTCGCTTTGGGGTTTC.CGCCCG.GC.CGGCG.CCGGGCCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGcc < 2:261491/101‑1 (MQ=255)
ccgcgtgggggTTTC.CGCCCG.GG.CGCCG.CCGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCg < 1:5757731/94‑1 (MQ=255)
gcgcTTGGGGGTTTCCGCCCC.GG.CGCCG.CCGGGGCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCg < 2:444803/98‑1 (MQ=255)
ctgggggGTTT.CCCCCCGGG.CGGCC.CCGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGAcc < 2:4695619/98‑1 (MQ=255)
gggttgtccGCCCC.GG.CGGCG.CGGCGGCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGc < 1:2111138/93‑1 (MQ=21)
ccGCCCC.GG.CCCCC.CCGAGGCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCgg < 1:672459/100‑1 (MQ=255)
ccg.cCGGGGCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCt < 1:2678747/100‑1 (MQ=37)
g.cCGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCg < 2:4640582/101‑1 (MQ=255)
gAGGCGACCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCCAAGAATTCCGATCACCCTGAACCACCTGCCGCCCGGGGAGAGCGGCGAAAAATCCTCGAcc > 2:1677883/1‑101 (MQ=9)
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CGGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACC > NC_014034/1721420‑1721605
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 19 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
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