Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_014034 1,721,519 +GG 100% intergenic (‑414/+32) RCAP_rcc01588 ← / ← RCAP_rcc01589 GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0140341,721,5191.→G100.0% 63.9 20intergenic (‑414/+32)RCAP_rcc01588/RCAP_rcc01589GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein
Reads supporting (aligned to +/- strand):  new base (3/17):  ref base (0/0):  total (3/17)
*NC_0140341,721,5192.→G100.0% 64.1 20intergenic (‑414/+32)RCAP_rcc01588/RCAP_rcc01589GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein
Reads supporting (aligned to +/- strand):  new base (3/17):  ref base (0/0):  total (3/17)

CGGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACC  >  NC_014034/1721420‑1721605
                                                                                                         ||                                                                                       
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACccg.ccc                                                                                          >  1:1199041/1‑100 (MQ=255)
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACccg.cc...g                                                                                       >  2:5163164/1‑101 (MQ=255)
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACccg.cc...g                                                                                       >  1:2245891/1‑101 (MQ=255)
cgGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCCCGGCGCCccg.ccc                                                                                          >  2:2111021/1‑100 (MQ=255)
  ggTTCCAAATAACTCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...cgg                                                                                     >  2:568191/1‑101 (MQ=255)
  ggTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...cgg                                                                                     >  1:2310463/1‑101 (MQ=255)
    ttCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...ggggg                                                                                   >  2:3844406/1‑99 (MQ=255)
    ttCCAAATAACGCGATGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...ggggg                                                                                   >  2:898670/1‑99 (MQ=255)
       cAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...ggggggtg                                                                                >  1:2614847/1‑96 (MQ=255)
       cAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...gggggctg                                                                                >  1:2406131/1‑96 (MQ=255)
        aaaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...ggggggtgg                                                                               >  2:1780134/1‑95 (MQ=255)
          aTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGGTTT.CGCCTC.GG.CTGCG.CCGGGGGGACccg.cc...gccggctgcgg                                                                             >  1:4960956/1‑91 (MQ=38)
           tAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...gggggcctcgcc                                                                            >  2:550800/1‑92 (MQ=255)
               gcgcTGCGGGCCTCCCTCCCGCTGCTTTTTTTTTTTGGCGGGTCGCTTGGGGGATTC.CGCCGG.GG.CTGCG.CCGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCg                                                                          <  2:2405997/101‑1 (MQ=255)
               gcgcTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CCCG.GGGCGGCGcccccc                                                                          >  2:4830318/1‑100 (MQ=37)
                   ggCGGCCCCCCCCCCCGCTGCTTTTTTTTTTGGGCCGGCCCCGTGGGGGTTTC.CGCCCC.GG.CGGCC.CGGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGAcc                                                                      <  1:2534857/100‑1 (MQ=255)
                   ggCGGCCCCCCCCCCCCCTGCGTTTTTTTTTTGCCCGGCCGCTTTGGGTTTTC.CCCCCC.GG.CCCCG.CCGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGAcc                                                                      <  1:3520739/100‑1 (MQ=255)
                       ggCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCGCCC...GGGGGGCGGCCCCCCCccccccc                                                                 >  2:2429678/1‑101 (MQ=25)
                        cccccccccccGCCGCTTTTTTTTTGTGGCCGGTCGCTTTGGGGTTTC.CGCCTC.GG.CGGCG.CCGAGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGAccccccc                                                                 <  2:5078845/97‑1 (MQ=255)
                                 ccgctgttttttTTTTTGGGCCGGTCG.CTTGGGGGTTT.CCCCCCGGG.CCGCC.CGGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGAtct                                                        <  1:3863816/92‑1 (MQ=255)
                                   gCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CCGGGGGGCTGCGCCCCCGGCCCCCCCCCGataaatcc                                                       >  2:3351300/1‑94 (MQ=21)
                                   gCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CCGG.GGGCTGCGCCCCCGGGCCCCCCCCCAAGAtctcc                                                      >  2:3879692/1‑100 (MQ=21)
                                      gcgcTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CCGG.GGGCGGCGGCCCCGGACCCCCCCCCAAGAtaccacaa                                                   >  1:1644111/1‑94 (MQ=18)
                                           tttttgttGGCCGCTCGCC.TGGGGTGTT.CCCCCC.GGCCGGCG.CCGAGCCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCt                                              <  1:605306/95‑1 (MQ=12)
                                              ttttgGCCCGGTCGCCTGGGGGTTTC.CCCCCC.GG.CCGCG.CCGGGGCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGa                                           <  1:1907774/101‑1 (MQ=16)
                                                       gggcgcgtgggggTTCT.CGCCCG.GG.CCGCG.CCGCGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGc                                  <  2:445537/92‑1 (MQ=16)
                                                        ggtgCCTTTGGGTTTT.CCCCCC.GG.CCGGGCCCGGGGCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGc                                  <  2:3752836/98‑1 (MQ=16)
                                                        gTCGCTTTGGGGTTTC.CGCCCG.GC.CGGCG.CCGGGCCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGcc                                 <  2:261491/101‑1 (MQ=255)
                                                         ccgcgtgggggTTTC.CGCCCG.GG.CGCCG.CCGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCg                                <  1:5757731/94‑1 (MQ=255)
                                                          gcgcTTGGGGGTTTCCGCCCC.GG.CGCCG.CCGGGGCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCg                                <  2:444803/98‑1 (MQ=255)
                                                             ctgggggGTTT.CCCCCCGGG.CGGCC.CCGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGAcc                             <  2:4695619/98‑1 (MQ=255)
                                                                 gggttgtccGCCCC.GG.CGGCG.CGGCGGCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGc                         <  1:2111138/93‑1 (MQ=21)
                                                                        ccGCCCC.GG.CCCCC.CCGAGGCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCgg                  <  1:672459/100‑1 (MQ=255)
                                                                                     ccg.cCGGGGCCCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCt       <  1:2678747/100‑1 (MQ=37)
                                                                                       g.cCGGGGCGCCCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCg     <  2:4640582/101‑1 (MQ=255)
                                                                                           gAGGCGACCCG.CCGG.GGGCTGCGCCCCCGGACCCCCCCCCAAGAATTCCGATCACCCTGAACCACCTGCCGCCCGGGGAGAGCGGCGAAAAATCCTCGAcc  >  2:1677883/1‑101 (MQ=9)
                                                                                                         ||                                                                                       
CGGGTTCCAAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCCGGTCGCCTTGGGGATTT.CGCCTC.GG.CTGCG.CCGAGGCGACCCG.CC...GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACC  >  NC_014034/1721420‑1721605

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG