BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	1,823,740	+C	100%	intergenic (+25/‑148)	RCAP_rcc01687 → / → RCAP_rcc01688	HK97 family phage major capsid protein/hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	1,823,740	1	.→C	100.0%	87.5	191	intergenic (+25/‑148)	RCAP_rcc01687/RCAP_rcc01688	HK97 family phage major capsid protein/hypothetical protein
Reads supporting (aligned to +/- strand): new base (108/55): ref base (0/28): total (108/83)
Fisher's exact test strand distribution p-value = 3.37e-12
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.98e-01

Only 100 of 224 total aligned reads displayed.


CTATGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.A.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGTCTGCGCCCG  >  NC_014034/1823640‑1823837


ctATGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.a.a                                                                                                       >  2:1384787/1‑101 (MQ=255)


 tATGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.A.c                                                                                                     >  2:4788886/1‑101 (MQ=255)


    gCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.A.c.c.cc                                                                                                <  2:2388593/101‑2 (MQ=255)


    gCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.A.c.c.cc                                                                                                <  2:4630518/101‑2 (MQ=255)


      gAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.A.c.c.ccgg                                                                                              <  1:1767085/101‑4 (MQ=255)


      gAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.A.c.c.ccgg                                                                                              <  1:34206/101‑4 (MQ=255)


      gAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.A.c.c.ccgg                                                                                              >  1:4208149/1‑98 (MQ=255)


       aGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.A.c.c.ccggc                                                                                             <  2:2265635/101‑5 (MQ=255)


          aaGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTgc                                                                                          <  1:1683964/101‑1 (MQ=255)


           aGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTGGTAACGGGCGGTGAAGGGGCC.GGGGGG.A.ACC.C.C.GGCTgcc                                                                                         >  1:1900821/1‑101 (MQ=255)


              gggTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTgccgcc                                                                                      >  1:1201357/1‑101 (MQ=255)


              gggTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTgccgcc                                                                                      >  1:4180810/1‑101 (MQ=255)


                 tGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTTTTGAAGTTTGCCGCCTCGTAACGGGCGGGGAAGGGGCC.GGGGGC.A.C.C.CGC.GGCTGCCGCCGGt                                                                                   <  2:3632919/101‑1 (MQ=255)


                 tGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGt                                                                                   >  1:3896654/1‑101 (MQ=255)


                  gggCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGtt                                                                                  <  1:2258892/101‑1 (MQ=255)


                   ggcggcGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTc                                                                                 <  1:2622791/101‑1 (MQ=255)


                    gcggcgATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCg                                                                                <  1:3060131/101‑1 (MQ=255)


                     cggcgATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGc                                                                               <  1:5748727/101‑1 (MQ=255)


                       gcgATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCg                                                                             <  1:2054373/101‑1 (MQ=255)


                        cgATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGTGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCgg                                                                            <  2:821188/101‑1 (MQ=255)


                        cgATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCgg                                                                            <  1:2492291/101‑1 (MQ=255)


                        cgATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCgg                                                                            >  2:1733185/1‑101 (MQ=255)


                         gATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCggg                                                                           >  2:2866406/1‑100 (MQ=255)


                         gATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGt                                                                           <  1:5217829/101‑1 (MQ=255)


                          aTGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTc                                                                          >  1:657972/1‑101 (MQ=255)


                          aTGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTc                                                                          <  1:5153479/101‑1 (MQ=255)


                           tGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTcg                                                                         <  2:3189559/101‑1 (MQ=255)


                           tGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTcg                                                                         >  1:4261229/1‑101 (MQ=255)


                            gTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.A.CAC.C.GGCTGCCGCCGGTTCGCCGGCcgg                                                                        >  2:5162487/1‑101 (MQ=255)


                             tCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGCAA.A.C.C.C.GGCTGCCGCCGGTTCGCCGGTcggg                                                                       >  1:2724098/1‑101 (MQ=255)


                              cAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTcgggc                                                                      >  1:4852547/1‑101 (MQ=255)


                                   aTTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGggcgggcg                                                                 <  1:1527022/101‑1 (MQ=255)


                                   aTTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGggcgggcg                                                                 >  2:1842626/1‑101 (MQ=255)


                                     ttCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGgcgggcgcg                                                               >  1:4021594/1‑101 (MQ=255)


                                       cgccgcGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGgcgggcgcggg                                                             >  1:111674/1‑101 (MQ=255)


                                        gccgcGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGgcgggcgcgggc                                                            >  1:53462/1‑101 (MQ=255)


                                        gccgcGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGGCGGgcgggcgcgggc                                                            >  1:4914595/1‑101 (MQ=255)


                                          cgcgATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCtt                                                          >  1:5583936/1‑101 (MQ=255)


                                          cgcgATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCtt                                                          <  1:1014338/101‑1 (MQ=255)


                                           gcgATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.ACC.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTc                                                         <  1:89656/101‑1 (MQ=255)


                                           gcgATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGGGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGACGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTc                                                         >  2:5252640/1‑101 (MQ=255)


                                              aTCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCgg                                                      <  1:366544/101‑1 (MQ=255)


                                               tCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCCGc                                                     >  1:2926097/1‑101 (MQ=255)


                                                cAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGcc                                                    >  1:1309448/1‑101 (MQ=255)


                                                cAAGCTGTGGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.ACC.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGcc                                                    <  2:2130929/101‑1 (MQ=255)


                                                 aaGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCg                                                   >  1:5531306/1‑101 (MQ=255)


                                                  aGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGc                                                  >  2:3689037/1‑101 (MQ=255)


                                                   gCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.ACC.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCt                                                 <  2:1084170/101‑1 (MQ=255)


                                                    cTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGGCGGTCGGGCGGGGGCGGGCTTCCGGCCGCTg                                                >  2:4221594/1‑101 (MQ=255)


                                                    cTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTg                                                >  1:3532695/1‑101 (MQ=255)


                                                    cTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTg                                                <  2:3811765/101‑1 (MQ=255)


                                                    cTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTg                                                <  1:2181404/101‑1 (MQ=255)


                                                    cTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTg                                                <  2:5274824/101‑1 (MQ=255)


                                                     tGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGc                                               >  1:5775223/1‑101 (MQ=255)


                                                      gTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGcc                                              <  1:5274427/101‑1 (MQ=255)


                                                      gTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGcc                                              <  1:1380626/101‑1 (MQ=255)


                                                         gAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAg                                           >  2:1658147/1‑101 (MQ=255)


                                                             tttGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAgctgc                                       >  2:4509190/1‑101 (MQ=255)


                                                             tttGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAgctgc                                       <  1:445155/101‑1 (MQ=255)


                                                             tttGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAgctgc                                       >  1:3323550/1‑101 (MQ=255)


                                                               tGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.ACC.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctc                                     <  2:3509746/101‑1 (MQ=255)


                                                               tGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctc                                     >  2:1409564/1‑101 (MQ=255)


                                                               tGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctc                                     >  1:3990587/1‑101 (MQ=255)


                                                                gccgccTCGTAACGGGCGGTGAGGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctcc                                    <  2:2671344/101‑1 (MQ=255)


                                                                gccgccTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctcc                                    >  2:1233035/1‑101 (MQ=255)


                                                                 ccgccTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.ACC.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctccc                                   <  2:2166029/101‑1 (MQ=255)


                                                                 ccgccTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctccc                                   >  1:2106718/1‑101 (MQ=255)


                                                                  cgccTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctccct                                  <  2:4357018/101‑1 (MQ=255)


                                                                  cgccTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGGCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctcccc                                  >  2:4984782/1‑100 (MQ=255)


                                                                   gccTCGTACCGGGGCGTGAAGGGGCC.GGGGGC.ACC.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctccctc                                 <  1:4995857/101‑1 (MQ=255)


                                                                   gccTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctccctc                                 <  2:3523590/101‑1 (MQ=255)


                                                                   gccTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGctccctc                                 >  1:3485473/1‑101 (MQ=255)


                                                                      tCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgt                              >  2:557924/1‑101 (MQ=255)


                                                                       cGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtc                             >  1:2402133/1‑101 (MQ=255)


                                                                       cGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtc                             <  1:1549020/101‑1 (MQ=255)


                                                                        gTAACGGGCGGTGAAGGGGCC.GGGGGC.ACC.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtcc                            <  1:4379781/101‑1 (MQ=255)


                                                                        gTAACGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTGCGGCCGCTGCCTTGCTGCTCCCtccggcc                            >  2:2207804/1‑101 (MQ=255)


                                                                         taggcggCGGGGAACGGGCC.GGGGGA.A.A.C.C.CGGGCTACCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtccg                           <  1:5267956/96‑1 (MQ=255)


                                                                          aaCGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCtccgtcccc                          >  2:4884370/1‑99 (MQ=255)


                                                                          aaCGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGa                          >  2:3057834/1‑101 (MQ=255)


                                                                           aCGGGCGGTGAAGGGGCC.GGGGGC.ACC.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAg                         <  2:5774928/101‑1 (MQ=255)


                                                                           aCGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAg                         <  2:111654/101‑1 (MQ=255)


                                                                           aCGGGCGGGAAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAg                         <  1:2866567/101‑1 (MQ=255)


                                                                            cGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGt                        >  1:2005099/1‑101 (MQ=255)


                                                                            cGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGt                        >  1:4531412/1‑101 (MQ=255)


                                                                            cGGGCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGt                        >  1:854624/1‑101 (MQ=255)


                                                                             gggGGGGGAGGGGGCG.GGGGGC.ACC.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTg                       <  1:3922818/101‑1 (MQ=255)


                                                                             gggCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTg                       <  1:2463093/101‑1 (MQ=255)


                                                                              ggCGGTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTgg                      >  2:4204345/1‑101 (MQ=255)


                                                                                 ggTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCgg                   >  1:4632255/1‑101 (MQ=255)


                                                                                  gTGAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTACCTGCTCCCTCCGTCCGAGTGGCggg                  >  2:3406465/1‑100 (MQ=255)


                                                                                   gggaGGGGCCGGGGGGC.A.C.C.C.CGGGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGt                  <  2:3990343/98‑1 (MQ=255)


                                                                                    gAAGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGc                >  2:669496/1‑101 (MQ=255)


                                                                                     aaGGGGCC.GGGGGC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCg               >  1:1449909/1‑101 (MQ=255)


                                                                                           cc.GGGGGC.ACC.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGTCt         <  2:3018976/101‑1 (MQ=255)


                                                                                            cggggggC.A.C.C.C.CGGGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGTCt         <  2:4813750/99‑1 (MQ=255)


                                                                                            c.GGGGGC.ACC.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGTCTg        <  1:4793833/101‑1 (MQ=255)


                                                                                             ggggggC.A.CCC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGTCTg        <  1:3112422/100‑1 (MQ=255)


                                                                                              gggggC.A.ACC.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGTCTgc       >  2:2295912/1‑101 (MQ=255)


                                                                                                   c.A.A.C.C.CGGGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGTCTGCGCCCg  <  2:3261154/101‑1 (MQ=255)


CTATGCGAGCAAGCGGGTGGGCGGCGATGTCAGCGATTTCGCCGCGATCAAGCTGTTGAAGTTTGCCGCCTCGTAACGGGCGGTGAAGGGGCC.GGGGGC.A.A.C.C.C.GGCTGCCGCCGGTTCGCCGGTCGGGCGGGCGCGGGCTTCCGGCCGCTGCCTAGCTGCTCCCTCCGTCCGAGTGGCGGTGCGGGGTCTGCGCCCG  >  NC_014034/1823640‑1823837

Base quality scores:


ATCG

< 3 ≤


ATCG

< 15 ≤


ATCG

< 23 ≤


ATCG

< 33 ≤


ATCG

< 40 ≤


ATCG