BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	2,485,296	+C	2.1%	coding (90/174 nt)	RCAP_rcc02310 →	hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	2,485,296	1	.→C	2.1%	3.2 ‑0.6 ‑0.0	140	coding (90/174 nt)	RCAP_rcc02310	hypothetical protein
Reads supporting (aligned to +/- strand): new base (3/0): ref base (98/39): total (101/39)
Fisher's exact test strand distribution p-value = 5.60e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.93e-01

Only 100 of 182 total aligned reads displayed.


GAGCCGGTTGATTGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTGCGAAGGCGGTCTTGTGCCCACCCGCGCGCTGACGGGCGGGAAAAGGCG  >  NC_014034/2485196‑2485396


gAGCCGGTTGATTGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.a                                                                                                           >  2:1218282/1‑101 (MQ=255)


gAGCCGGTTGATGGGCCGAGGCCAC.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.a                                                                                                           <  2:5700962/101‑1 (MQ=255)


 ggctgtttGTTTGGCCGGGGCCAC.CGCCGGGCCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.t                                                                                                         <  2:3929768/95‑1 (MQ=17)


 ggCCGGTTGATTGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.t                                                                                                         <  2:1719069/100‑1 (MQ=255)


 aGCCGGTTGATCGGCCGAAGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.t                                                                                                         >  1:5298620/1‑101 (MQ=255)


  tcccgTTGTTTGGCCGGGGCCCTCCGCCGGGGCCACGCGACACATTGGCCCCGGGCCCGCCGAGGG.CCCAGAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.t                                                                                                         <  1:3048800/97‑1 (MQ=14)


  gCCGGTTGATTGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGGCCCGC.CC.A.Tg                                                                                                        >  2:677821/1‑101 (MQ=255)


    cGGTTGATTGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.C.Tggc                                                                                                      >  1:4202356/1‑101 (MQ=255)


      gTTGATTGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.Tggcgg                                                                                                    >  1:3907243/1‑101 (MQ=255)


       ttGATTGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.Tggcggg                                                                                                   >  2:1105598/1‑101 (MQ=255)


       ttGATTGGCCGAGGCCAC.CCCCGAGCCCGCGCGCGACATCAGCCCCATGACCGCCGGGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.Tggcggg                                                                                                   <  2:4649381/101‑1 (MQ=17)


        tGATTGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.Tggcgggc                                                                                                  <  2:2680414/101‑1 (MQ=255)


         gATTGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.Tggcggggg                                                                                                 >  1:155050/1‑99 (MQ=255)


         gATTGGCCGAGGCCAG.CCCCGGGCCCCCGCGCGACATCAGCCCCATGCCCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.Tggcgggc.g                                                                                                <  1:2085765/101‑1 (MQ=17)


          aTTGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGgg.g.c                                                                                              >  1:2056220/1‑101 (MQ=255)


          aTTGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGgg.g.c                                                                                              >  2:930412/1‑101 (MQ=255)


           ttGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.Ca                                                                                             >  2:137257/1‑101 (MQ=255)


           tgggCCGAGGCCAT.CGCCGGGCCCACGCGCGACATCAGCCCCATGCCCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.C.Ca                                                                                             <  1:3295941/99‑1 (MQ=17)


            tGGCCGAGCCCAC.CGCCGAGCCCACGCGCGACACCAGCCCCATGCCCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAt                                                                                            <  2:4867724/101‑1 (MQ=17)


             ggCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.Cact                                                                                           >  2:4272288/1‑99 (MQ=255)


             ggCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAt.t                                                                                          <  2:2414079/101‑1 (MQ=255)


              gCCGAGGCCAC.CGCCGGGCCCCCGCGCGACATCAGCCCCATGCCCGCCGAGGG.CCCAAGGCCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.c                                                                                        <  2:4422299/101‑1 (MQ=17)


                cggggCCAC.CGCCGAGCCCACGCGCGCCATCAGCCCCATGCCCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.cgc                                                                                      <  1:5546516/98‑1 (MQ=17)


                cGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.CGT.T.cgc                                                                                      >  2:3738127/1‑101 (MQ=255)


                cGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.Caaccgc                                                                                        >  1:1075498/1‑96 (MQ=255)


                 gAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.CAT.T.cgcg                                                                                     >  1:2848463/1‑101 (MQ=255)


                   ggCCGT.CGCCGCGCCCCCGCGCGACTCCATCCCCATGACCGCGGAGGG.CCCAAAGGCCCGCGG.CC.TGCCCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGcgcc                                                                                   <  2:276615/101‑1 (MQ=14)


                    gCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.C.TGGCGGGC.G.CCC.T.CGcgccc                                                                                  >  1:3267571/1‑100 (MQ=255)


                     ccAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.CCA.T.CCcgccgc                                                                                 >  2:2642803/1‑101 (MQ=17)


                      cAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.GCCAT.T.CGcccccc                                                                                 >  1:3976774/1‑99 (MQ=17)


                       atctcccGAGGCCCCGCGCGACATCAGCCCCATGCCCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCgccgcc                                                                                <  2:3621492/96‑1 (MQ=255)


                       aT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CCT.T.CGCGccgccg                                                                               >  2:3196460/1‑101 (MQ=255)


                        accGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGccgccg                                                                               <  2:3893216/99‑1 (MQ=255)


                            ccGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.TCCGCCCCCCCgggg                                                                            >  2:3961070/1‑101 (MQ=17)


                             cgggcccccgcgcgACATCAGCCCCATGCCCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCt                                                                          <  1:1711352/93‑1 (MQ=255)


                             cGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.CCT.T.CGCGCCCCCGGGGcg                                                                          >  1:3506243/1‑100 (MQ=255)


                             cGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.CCC.T.CGCGCCCCCCGGGcg                                                                          >  2:3957337/1‑100 (MQ=17)


                              gAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCcgggggg                                                                         >  1:1334314/1‑98 (MQ=255)


                               aGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.CAC.T.CGCGCCGCCCGGGGTgg                                                                        >  2:2007768/1‑101 (MQ=18)


                               aGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTgg                                                                        >  1:4400065/1‑101 (MQ=255)


                                gcccACGCGCGACATCACCCCCAGGCCCGCCGAGGG.CCCAAAGCCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTggg                                                                       <  2:4847910/99‑1 (MQ=17)


                                 gccccccgcgACCTCAGCCCCATGCCCGCCGGGGG.CCCAAGGGCCCGCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGgc                                                                      <  1:4605467/95‑1 (MQ=17)


                                 gCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.GGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGgc                                                                      <  1:736680/101‑1 (MQ=255)


                                 cccccgcgcgCCATCCGCCCCAGTCCCGCCGGGGC.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGgc                                                                      <  1:1595882/97‑1 (MQ=14)


                                  ccACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.CAG.T.TGCGCCGCCGCGGCTGGgcg                                                                     >  2:1791270/1‑101 (MQ=18)


                                   cccgcgcgACATCAGCCCCATGCCCGCCGGGGC.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGgcgc                                                                    <  1:60996/99‑1 (MQ=255)


                                   cACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.GGCGTCGCCGGGGCTTGgggc                                                                    >  1:3713252/1‑101 (MQ=17)


                                   cACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAC.T.CGCGCCCCCGGGGGCGGgcgg                                                                    >  2:4748374/1‑100 (MQ=17)


                                    ccgcccgACACCAGCCCCAGGCCCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCa                                                                   <  1:114797/100‑1 (MQ=17)


                                    aCGCGCGACATCAGCCCCATGACCGCCGAGCG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.CAT.T.TCCGCCGCCGGGGCCggggtcc                                                                   >  1:2793708/1‑97 (MQ=17)


                                     cgcgcgACTTCCCCCCCATGACCGCCGGGGG.CCCAAAGGCCCGCGC.CC.TGCCCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAg                                                                  <  2:5360250/101‑1 (MQ=14)


                                     cgcgcgACATCAGCCCCAGGCCCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAg                                                                  <  1:5704572/101‑1 (MQ=255)


                                        gcgACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CGA.T.CGCGCCGCCGGGGCGGGGCGCCGGcc                                                               >  1:1990610/1‑101 (MQ=17)


                                         cgACATTTGCCCCAAGACCGCCGAGGGCCCCAAAGGCCCTCGG.CC.AGCGCCCGCCCCGCGCC.ACTGGCGGGG.G.CCTCT.CGCCCCCCCggggtgcggggtgg                                                                  >  2:1065332/1‑91 (MQ=18)


                                         cgACATTTGCCCCAAGACCGCCGAGGGCCCCAAAGGCCCTCGG.CC.AGCGCCCGCCCCGCGCC.ACTGGCGGGCGG.CCT.T.C.CGCCCCCCCGGCTGGGCGCCgg                                                                 >  1:4909194/1‑101 (MQ=18)


                                         cgACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TTCCCCCCCCCCGC.CCAA.GGGGGGGC.G.CAT.T.GCCCCCCCCGGGGCGGGGGGCCGGcc                                                               >  1:4855729/1‑101 (MQ=9)


                                             aTCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCCCCGGGGGTGGGGGCCGGCCCCTGt                                                          >  1:5639548/1‑101 (MQ=17)


                                             aTCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CCCGCCGCCGGGGCGGGGCGCCggggcccgg                                                          >  2:3474266/1‑94 (MQ=14)


                                                  ccccATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCCCCGGGGCCGGGTGCAGGGCTCTCTCACGc                                                     >  2:833335/1‑101 (MQ=14)


                                                  ccccAAGACCGCCGAGGGCCCCAAAGGCCCTCGG.CC.AGCGCCCGCCCCGCGCC.ACTGGCGGGG.G.CCTCT.CGC.CCCCCGGGGGGGGGCGCCgggccccgtcc                                                        >  2:4100284/1‑92 (MQ=18)


                                                   cccATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCCCCGGGGCTGGGGGCAGGCCCCTGTCACGCt                                                    >  1:3528043/1‑101 (MQ=255)


                                                    ccATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGGGCCGGCCTCTGTCACGcct                                                   >  2:522224/1‑99 (MQ=255)


                                                     cATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGGGCCGGCCCCTGTCACGCTTg                                                  >  1:5106122/1‑101 (MQ=255)


                                                       aggccccgggggg.CCCAAAGGCCCCCCG.CCGCCCCCCCCCCCCCC.CC.G.GGGGGGGC.G.CCT.C.CGCGCGCCCGGGGGGGGGCGCAGGCCTCTGTCACGCTTGc                                                 <  1:2529268/91‑1 (MQ=2)


                                                        gACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCCGGGCTGGGGGCAGGCCTCTTTCACGCTTTCGa                                               >  1:1187614/1‑101 (MQ=14)


                                                        gACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCCC.CC.A.TGGCGGGC.G.CCT.T.CGCGCGGCCCGGGCGGGGGGGGGGCCTCTCTCACGCATGCGa                                               >  2:1898624/1‑101 (MQ=14)


                                                           cgccgAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGCCCCTGTCACGCCTGCGAAgg                                            >  1:1620553/1‑101 (MQ=255)


                                                            gccgAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTTCGaaagg                                           >  2:1582057/1‑98 (MQ=255)


                                                            gccgAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCCCCGGGGCTGGGGGCAGGCCTCCGTCACGCTTGGGACGGc                                           >  1:986441/1‑101 (MQ=14)


                                                              cgAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.CCT.T.CCCGCCGCCGGGGGTGGGGGCCGGGCCCTGTCACGCCTGCggaagagg                                         >  2:1118110/1‑94 (MQ=14)


                                                               gAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.CCT.T.CGCGCCCCCGGGGCCGGGGGCCGGCCGCTGTCACGCTTGCGAAGGCGGt                                        >  1:3845715/1‑101 (MQ=17)


                                                               gAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CCT.T.TCCGCCGCCGGGGCTGGGGGCAGGGCTCTGTTCCGCTTGCGGAGGGggg                                        >  2:2349165/1‑100 (MQ=11)


                                                               gAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGGGCAGGCCCCCTGCACGCCTGCGAAGGCggg                                        >  2:5620688/1‑100 (MQ=14)


                                                                aGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTGCGAAGGCgggc                                       >  1:524234/1‑99 (MQ=255)


                                                                 ggg.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CCT.T.CGCGCCCCCGGGGCTGGGGGCAGGCCTCTGTCACGCTTGCGAAGGGGGGCt                                      >  1:545456/1‑101 (MQ=17)


                                                                  gg.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGGCCCTGTCACGCCTGCGAAGGCGGGCtt                                     >  2:5092608/1‑101 (MQ=17)


                                                                    ggcccgaGGCCCGCGGCCC.CGCCCCCCCCCCCC.CC.C.GGGGGGGC.G.CTTGT.GGCGGCGGGGGGGGGGGGCGAAGGCCTCTGTCACGCTTGCGAAGGCGGTCt                                      <  1:5502272/95‑1 (MQ=255)


                                                                      ccAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGG.G.CAT.T.CCCGCCGCCGGGGCTGGGGGCGGGCCTCTGTCACCCTTGCGAAAGCGGGCTtttg                                  >  1:3445008/1‑101 (MQ=14)


                                                                       cAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CTCGCCGCCGGGGCTGGGCGCAGGCCCCTGTCACGCTTGCGAAGGCGGGCTTGTGc                                 >  2:2688478/1‑101 (MQ=255)


                                                                       cAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCGGGGCGCAGGCCTCTGTCCCGCTTGCGAAGGGGGGCTtgtgg                                 >  1:2742200/1‑100 (MQ=11)


                                                                        aaaGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CTCGCCGCCCGGGCTGGGCGCAGGGCCCTGTCACCCCTGCGGAGGGGGGCTtttggc                                >  1:4031303/1‑99 (MQ=14)


                                                                        aaaGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCCGGCCTCTGTCACGCTTGCGAAGGCGGGCTTGTGcc                                >  1:2732568/1‑101 (MQ=255)


                                                                              ccTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTGCGAAGGCGGGCTTGTGCCCACCcg                          >  1:2692943/1‑101 (MQ=255)


                                                                               cTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCCCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTGCGAAGGCGGTCTTGTGccccacccc                         >  1:859483/1‑95 (MQ=255)


                                                                                 cGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.TGCGCCGCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTGCGAAGGCGGTCTTGTGCCCACCcccgc                       >  2:3855275/1‑101 (MQ=255)


                                                                                  gg.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGCC.G.CAT.T.CTCGCCGCCGGGGCAGGGCGCCCGCCTCTGTCAAGCTTGCGAAAGCGGGCCTGTGCCCCCCcgcgcg                      >  2:1526965/1‑101 (MQ=17)


                                                                                     cc.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTGCGGAGGCGGGCTTGTGCCCACCCgcgcgcc                    >  2:2851484/1‑100 (MQ=255)


                                                                                      c.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTGCGAAGGCGGTCTTGTGCCCACCCGCGCGCTg                   >  2:3301522/1‑101 (MQ=255)


                                                                                       ccccccccccccccc.CC.G.GGGCGGGC.G.CTT.C.CGCGCCGCGGGGGCGGGGCACAGGCCTCTGTCACGCTTGCGAAGGCGGTCTTGTGCCCACCCGCGCGCTg                   <  1:5059581/96‑1 (MQ=25)


                                                                                         ccccccccccccc.CC.G.GGGGGGGC.G.CGT.G.CGCGCCGGGGGGGGGGGGCAAAGGCCTCTGTCACGCTTGCGAAGGCGGTCTTGTGCCCACCCGCGCGCTGAc                 <  1:2362166/98‑1 (MQ=255)


                                                                                           gcccgcccCGC.CC.A.TGGCGGGC.G.CAA.T.AGCGCCGCCGGGGCTGGGGGCAGGCCTCTGTCACGCCTGCGAAGGCGGTCTTGTGCCCACCCGCGCGCCGCcgg               >  2:1615784/1‑101 (MQ=21)


                                                                                            cccgccccgc.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGGCTCTGTCACGCTTGCGAAGGCGGGCTTGTGGCCACCCGCGCGCTGGcggg              >  2:479259/1‑101 (MQ=21)


                                                                                             ccgccccgc.cC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTGCGAAGGCGGGCTTGTGCCCACCCGCGCGCTGAcgggc             >  1:2231452/1‑101 (MQ=255)


                                                                                               ccccccc.cc.A.GGGCGGGC.G.GGT.C.CGCGCGGCGGGGGCGGGGCAAAGGCCTCTGTCACGCTTGCGAAGGCGGTCTTGTGCCCACCCGCGCGCTGAcgggcgg           <  2:8857/100‑1 (MQ=255)


                                                                                                cccccc.gc.A.GGGCGGGC.G.CAT.G.GGCAACGCGGGGGAGGAACGAAGGCCTCTGTCACGCTTGCGAAGGCGGTCTTGTGCCCACCCGCGCGCTGAcgggcggg          <  2:3591913/101‑1 (MQ=255)


                                                                                                 cccgc.cc.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCCGGCCTCTGTCACGCTTGCGAAGGCGGGCTTGTGCCCACCCGCCCGCGGCcgggcgggc         >  2:2105560/1‑100 (MQ=21)


                                                                                                 cccgc.cc.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTGCGAAGGCGGTCTTGTGCCCACCCGCGCGCTGACGGGCGGGa         >  1:3548487/1‑101 (MQ=255)


                                                                                                  ccgc.cc.G.GGGGGGGC.G.CTT.C.CGCGCCGCGGGGGGGGGCCGAAGGCCTCTGTCACGCTTGCGAAGGCGGTCTTGTGCCCACCCGCGCGCTGACGGGCGGGaa        <  2:4399798/101‑1 (MQ=255)


                                                                                                  ccgc.cc.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTGCGAAGGCGGTCTTGTGCCCACCCGCGCGCTGACGGGCGGGaa        >  1:4954379/1‑101 (MQ=255)


                                                                                                          a.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTGCGAAGGCGGGCTTGTGCCCACCCCCGCGCCGACGGGCGGGGAAAGGCg  >  2:806574/1‑101 (MQ=25)


GAGCCGGTTGATTGGCCGAGGCCAT.CGCCGAGGCCACGCGCGACATCAGCCCCATGACCGCCGAGGG.CCCAAAGGCCCTCGG.CC.TGCGCCCGCCCCGC.CC.A.TGGCGGGC.G.CAT.T.CGCGCCGCCGGGGCTGGGCGCAGGCCTCTGTCACGCTTGCGAAGGCGGTCTTGTGCCCACCCGCGCGCTGACGGGCGGGAAAAGGCG  >  NC_014034/2485196‑2485396

Base quality scores:


ATCG

< 3 ≤


ATCG

< 14 ≤


ATCG

< 22 ≤


ATCG

< 33 ≤


ATCG

< 40 ≤


ATCG