| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,056 | +T | 10.1% | intergenic (+104/‑138) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,056 | 1 | .→T | 10.1% | 52.2 ‑0.2 ‑0.3 | 139 | intergenic (+104/‑138) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (9/5): ref base (73/52): total (82/57) | ||||||||||
| Fisher's exact test strand distribution p-value = 7.79e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.51e-01 | ||||||||||
Only 100 of 152 total aligned reads displayed.
GGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.CCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAG > NC_014034/2493956‑2494151
|
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.t < 1:679154/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.t < 1:1688307/101‑1 (MQ=255)
cgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGc > 2:3060121/1‑101 (MQ=255)
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..g < 2:5573735/101‑1 (MQ=255)
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..g > 2:3684816/1‑101 (MQ=255)
cTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.a < 1:536070/101‑1 (MQ=255)
tGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aa < 2:3987542/101‑2 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGGCTTTCATCTTGCCCGAAATATCCCGGGGGGGG.AA.TGGC..G.aac > 1:5799507/1‑99 (MQ=18)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aag < 1:4336343/101‑3 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGG.AA.TGGC..G.aag > 1:2070495/1‑99 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagcc < 1:1249727/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCG.AA.TGGC..G.aagcc > 2:1913058/1‑97 (MQ=18)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagcca < 1:4722280/101‑6 (MQ=255)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccag < 1:4838278/97‑7 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccaga < 2:4252111/98‑8 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccaga > 2:628593/4‑94 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACAGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGG.AA.TGGC..G.aagccaga > 2:918705/4‑94 (MQ=18)
cgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccagag < 1:900261/99‑9 (MQ=255)
cgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccagag < 1:2977745/99‑9 (MQ=255)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccagagg < 2:1256930/100‑10 (MQ=255)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccagagg < 2:431362/100‑10 (MQ=255)
tCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccagaggg > 1:1692751/1‑91 (MQ=255)
tCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccagaggg < 1:2566573/101‑11 (MQ=255)
aaGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCa < 2:1919512/101‑1 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagc > 2:3927288/1‑99 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagc > 1:101779/1‑99 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:2783474/1‑98 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:128492/1‑98 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc > 2:596877/1‑101 (MQ=18)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.ccc > 1:2841308/1‑101 (MQ=18)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAGCCAG.AGGGGGGC.AGCG.ccc.cc < 2:2306639/101‑1 (MQ=17)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.ccc.cc > 2:224865/1‑101 (MQ=17)
ccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.ccc.ccctg < 1:1153654/101‑4 (MQ=17)
cccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.ccc.ccctgc < 2:1085111/101‑5 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGccc < 1:2517749/101‑1 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGccc > 1:3401375/1‑101 (MQ=17)
gggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGcccc > 2:5233772/1‑101 (MQ=0)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcg < 1:1558387/101‑1 (MQ=0)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCcg < 2:5706753/101‑1 (MQ=17)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgc > 2:4053107/1‑100 (MQ=0)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgc > 2:1503599/1‑100 (MQ=2)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgc > 1:2232856/1‑100 (MQ=2)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCcgg > 1:5353248/1‑101 (MQ=18)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCcgg > 1:5398684/1‑101 (MQ=17)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAA.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCcgg > 1:5262642/1‑101 (MQ=17)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgcc < 2:3021862/101‑3 (MQ=2)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCcggc > 2:2837301/1‑101 (MQ=17)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCcggc > 2:1738181/1‑101 (MQ=17)
atatTGGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgcc < 1:5657283/101‑3 (MQ=2)
tatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgccg > 2:496992/1‑101 (MQ=2)
atTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgccgg < 2:577947/101‑1 (MQ=2)
atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGG.AA.TGGC..GAAG.CCAGAGGGGGGC.CGCGACCC.CCTGCCCcggcgg > 1:4038341/1‑101 (MQ=17)
ttGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgccggat < 2:3238589/101‑3 (MQ=2)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTcc < 2:5492465/101‑1 (MQ=17)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGGGGGCCg > 1:4383610/1‑101 (MQ=14)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTggc > 2:1579395/1‑101 (MQ=17)
aGATGAAACCGGATTCCGTTCATCTTGCCTGAAATATTCCGGGGGGTG.AA.TGGA..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTggcgg < 1:2846712/101‑1 (MQ=9)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCt < 2:101759/101‑1 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCt > 1:5411536/1‑101 (MQ=18)
acccGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGGGCCtt < 1:1954441/99‑1 (MQ=17)
aaCCGGTTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCtt < 1:155720/101‑1 (MQ=17)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCtt > 1:3949650/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGCCGGCGCCTTg > 2:1191765/1‑101 (MQ=17)
ccGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGa > 2:746152/1‑101 (MQ=18)
ccGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGG.AA.TGGG..GAAG.CCCGAGGGGGGC.AGCG.CCCGCCTGCCCCGGCGGCCCGGCGCGGCGCCTGGa > 1:5192999/1‑101 (MQ=9)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg > 2:3084474/1‑101 (MQ=17)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgg > 2:342131/1‑101 (MQ=18)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc > 2:2526353/1‑101 (MQ=18)
gCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGGCCGTGGCGGGGCCTTGAcggcgg > 1:1075048/1‑98 (MQ=14)
ccTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcgg < 2:5245935/101‑1 (MQ=17)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 1:3962078/1‑101 (MQ=18)
tttCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg < 1:5669188/101‑1 (MQ=17)
tttCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg > 2:1404975/1‑101 (MQ=18)
tttCATCTGGCCCGAAACATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg < 2:5191648/101‑1 (MQ=17)
ttCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGGggggg > 1:2046882/1‑101 (MQ=17)
tCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGT..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggggg > 2:390890/1‑100 (MQ=18)
tCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc < 2:5308510/101‑1 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg > 2:786796/1‑101 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGAGGCGGCGCCTTGACGGGCGGGGGcgcg > 1:4266567/1‑101 (MQ=18)
ttGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCcgg > 2:2503471/1‑101 (MQ=18)
ccGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 2:5414592/101‑1 (MQ=18)
cGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTa < 1:191000/101‑1 (MQ=18)
gAAATATGCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCAGCGG.TCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 1:2674986/101‑1 (MQ=21)
gAAATATCCCGGGGGGTG.AA.TGGC..G.AA.GCCAGAGGGGGC.AGCGCCCC.CCCGCCCCCGCGGGCCGTGGCCGCGGCCTGACCGGGGGGGGCGCggggccttac > 2:1157928/1‑94 (MQ=0)
aaTATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAcc > 1:215147/1‑101 (MQ=21)
aaTATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCACGGCCTTGACGGGCGGGGGCGCGGGCATTaaac > 1:4992312/1‑99 (MQ=17)
atatCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGGCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTTACCg > 1:4980211/1‑101 (MQ=18)
atatCCCGGGGGGGGAAA.GGGC..A.AG.CCAAAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg < 2:1644352/101‑1 (MQ=25)
tatCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGa < 2:1684934/101‑1 (MQ=21)
tatCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGa < 1:4430595/101‑1 (MQ=21)
atCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGGCGGGGGGGGGGGCGGGGATTAACCGaa > 1:3943106/1‑101 (MQ=12)
tCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:3685044/101‑1 (MQ=21)
cccGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGAATTAACCGAAAt < 1:3137359/101‑1 (MQ=21)
ccGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt > 2:4893213/1‑101 (MQ=21)
ggggggTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCGTTAACCGAAATTga > 1:447796/1‑100 (MQ=21)
ggggggTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc < 2:4826904/101‑1 (MQ=25)
gggggTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa > 2:3301323/1‑101 (MQ=25)
ggggTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCaa < 1:2698124/101‑1 (MQ=25)
gTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAg < 1:341077/101‑1 (MQ=25)
gTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAg < 1:4768207/101‑1 (MQ=25)
|
GGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.CCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAG > NC_014034/2493956‑2494151
Base quality scores:
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 25 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|