| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 904,934 | +GC | 100% | intergenic (+38/‑158) | RCAP_rcc00821 → / → murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 904,934 | 1 | .→G | 100.0% | 60.0 | 157 | intergenic (+38/‑158) | RCAP_rcc00821/murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (72/65): ref base (4/16): total (76/81) | ||||||||||
| Fisher's exact test strand distribution p-value = 7.83e-03 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.84e-01 | ||||||||||
| * | NC_014034 | 904,934 | 2 | .→C | 100.0% | 60.0 | 157 | intergenic (+38/‑158) | RCAP_rcc00821/murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (72/65): ref base (4/16): total (76/81) | ||||||||||
| Fisher's exact test strand distribution p-value = 7.83e-03 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.21e-01 | ||||||||||
Only 100 of 169 total aligned reads displayed.
GGGCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTTTGGCT..G..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGACG > NC_014034/904834‑905025
||
gggCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..g < 1:522312/101‑1 (MQ=255)
gggCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..g < 1:2094628/101‑1 (MQ=255)
ggCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..G..c > 1:1134854/1‑101 (MQ=255)
ggCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..G..c < 2:5272508/101‑1 (MQ=255)
cTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..G..cgc > 2:5375651/1‑99 (MQ=255)
gAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..G..cgcca < 1:955043/101‑5 (MQ=255)
gAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..G..cgcca < 1:2601811/101‑5 (MQ=255)
gCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..G..cgccaaa < 1:4298836/101‑7 (MQ=255)
gCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..G..cgccaaa < 2:4681084/101‑7 (MQ=255)
gCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..G..cgccaaa < 1:1143380/101‑7 (MQ=255)
cGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..G..cgccaaaa > 2:3774536/1‑94 (MQ=37)
tgctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..G..cgccaaaatt < 1:2449985/101‑10 (MQ=25)
gctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTc > 2:4909067/1‑101 (MQ=25)
gctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTc < 2:2426117/101‑1 (MQ=25)
ctgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCa < 1:1767440/101‑1 (MQ=25)
tgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCAc < 2:3292211/101‑1 (MQ=25)
tgcGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCAc > 1:5432075/1‑101 (MQ=25)
gcgcTGGCCGGTGCGGCGGCTTTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCAcc > 1:3287348/1‑101 (MQ=21)
gcgcTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCAcc > 1:5517984/1‑101 (MQ=25)
gcgcTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCAcc < 2:453255/101‑1 (MQ=25)
cggtGGCCGGTGCGGCGCCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCAccc < 2:1869315/98‑1 (MQ=21)
gcgggCCGGGGGGGGGCCTTTTGGCGGGGATCCGCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCAcccc < 1:1167552/98‑1 (MQ=2)
cTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCAccccc < 2:583419/101‑1 (MQ=25)
ggTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCCGCGt > 1:2335112/1‑101 (MQ=21)
tGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTAt < 2:5687281/101‑1 (MQ=21)
tGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCAACCCCCGGCGGAt > 1:5534224/1‑101 (MQ=21)
ggcggcgGCTTTTGGCCGCGATGCACGGGCGCGACTGAGGGCGGGGCAGGGGGACGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTAt < 2:5010099/100‑1 (MQ=18)
ggcgtttctTTGCCGCGAGGGACAGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCTCCCCCCGGCGTATTTg < 2:2311579/95‑1 (MQ=17)
ggcggcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTg > 1:4046096/1‑101 (MQ=21)
gcggcTCTTTGCCGCGATGCGCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGc < 1:480374/101‑1 (MQ=18)
cggcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCa > 2:3549860/1‑101 (MQ=21)
gcTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCT..G..CGGC.AAAATTCACCCCCCGGCGTATTTGCAcc < 1:3832861/101‑1 (MQ=21)
ctctTTGCCGCGATGCATCGGCGCGACTGAGGCCGGGGCAGGGGGGCGCGGCCCCCCTC.TTTTGGCTGCG..C..C.AAACGTAACCCCCCGGCGCATTTGCACCa > 2:3676418/1‑101 (MQ=18)
tctTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAg < 2:666840/101‑1 (MQ=21)
tctTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAg > 2:2377827/1‑101 (MQ=21)
ctTTGCCGCGGTGCACTGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAgg < 1:147078/101‑1 (MQ=18)
tttGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGa > 2:2190187/1‑101 (MQ=21)
tttGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGa > 2:4091781/1‑101 (MQ=21)
tGCCGCGATGCACCGCCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGaaa < 2:3010441/101‑1 (MQ=18)
gcggcgATGCCCCGGGGCGACTGAGGTCGGGGCGGGGGGGCGCGGCCCCCCTC.TTTTGGCT..GC.C..C.AAAAATTCCCCCCCGGCGTATTTGCACCAGGaaaaa < 2:829823/98‑1 (MQ=16)
gCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGaaaa > 2:5665693/1‑101 (MQ=21)
gCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCCGCGTATTTGCACCAGGaaaa > 1:1488293/1‑101 (MQ=21)
ccGCGGTGCACCTGCGCGACTGAGGGCGGGGCAGGTGGGCGCTGCCCCCCTC.TTTTGGCT..GCTC..C.AAAATTCTCCCCCCGGCGTATTTGCACCAGGaaaaa < 1:908970/101‑1 (MQ=18)
ccGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGaaaaa < 2:3246143/101‑1 (MQ=21)
cgATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTCTTTGCACCAGGAAAAAGcc > 2:2725095/1‑101 (MQ=21)
gATGGACCGGCGCGACTGAGTGCGGGGCAGGGGCGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCCCCCCCCGGCGTATTTGCACCAGGAAAAAGccc < 1:1548111/101‑1 (MQ=18)
aTGTACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCg < 1:799938/101‑1 (MQ=21)
aTGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCg > 2:3303502/1‑101 (MQ=21)
aTGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCg > 2:1529971/1‑101 (MQ=21)
aTGCACCGGCGCGACTGAGGGCGGGGCAGGCGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCg < 2:3961107/101‑1 (MQ=21)
tggaCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCgg < 1:2196170/98‑1 (MQ=18)
gCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGc > 1:492972/1‑101 (MQ=21)
cGGCGCGACTGGGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGttt < 1:2231628/101‑1 (MQ=18)
cGGCGCGACTGAGGGCGGGGGAGGGGGGCGCTTCCCCCCTC.TTTTGGCT..GCCC..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGttt < 1:5614486/101‑1 (MQ=21)
cGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGttt > 2:4752275/1‑101 (MQ=21)
gcgcGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGttttt > 2:963612/1‑101 (MQ=21)
gcgACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTcc < 1:3034500/101‑1 (MQ=21)
aCTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTgg > 2:2343992/1‑101 (MQ=21)
aCTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTgg > 1:4104220/1‑101 (MQ=21)
aCTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGGTTTTCCTgg > 1:1834249/1‑101 (MQ=18)
cTGAGGGCGGGGCAGGGTGGCCCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGt < 1:4908116/101‑1 (MQ=21)
cTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGt > 2:1091195/1‑101 (MQ=21)
cTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGt < 2:4055050/101‑1 (MQ=21)
ggCGGGGCAGGGGGGCGCTGCTCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGaaa > 1:3284376/1‑101 (MQ=21)
ggCGGGGCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGaaa > 2:2222240/1‑101 (MQ=21)
ggggCAGGGGGGCGCTGCTCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATAc < 2:2032584/101‑1 (MQ=21)
ggggCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATAc < 2:1966245/101‑1 (MQ=21)
ggggCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGGTTTTCCTGGTCGAAATAc > 1:4077299/1‑101 (MQ=21)
ggggCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCCGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATAc > 1:1572025/1‑101 (MQ=21)
gggCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACg < 2:3089487/101‑1 (MQ=21)
ggCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGc > 2:1429558/1‑101 (MQ=21)
ggCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGc < 1:3148845/101‑1 (MQ=21)
gCAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGcc > 2:736497/1‑101 (MQ=21)
cAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCg < 1:5271844/101‑1 (MQ=21)
cAGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGCATTTGCACCAGG.AAAAGCCCGGCGTTTTTCTTGGTCGAAATACGCCgg > 2:1452935/1‑101 (MQ=18)
aGGGGGGCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCgg > 2:4331018/1‑101 (MQ=25)
ggggggCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCggg < 2:4358810/101‑1 (MQ=25)
gggggCGCTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCgggg < 2:1261250/101‑1 (MQ=25)
gcgcTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAg < 1:3655754/101‑1 (MQ=25)
cgcTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAgg > 2:2635387/1‑100 (MQ=25)
cgcTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAgc > 1:3674772/1‑100 (MQ=25)
cgcTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGt < 1:5714489/101‑1 (MQ=25)
gcTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCCCCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTc < 1:1530064/101‑1 (MQ=37)
gcTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTc > 2:4327751/1‑101 (MQ=37)
gcTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTc < 1:2981585/101‑1 (MQ=37)
gcTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTc > 2:1651366/1‑101 (MQ=37)
cTGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCCCCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTcc < 1:444896/101‑1 (MQ=25)
tGCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCg < 1:2377961/101‑1 (MQ=37)
gCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGc > 1:5661407/1‑101 (MQ=37)
gCCCCCCTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGc > 2:1397248/1‑101 (MQ=37)
ccccccTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCt < 1:3774779/101‑1 (MQ=37)
cccccTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCtt > 2:134521/1‑101 (MQ=38)
cccccTC.TTTTGGCTGCG..C..C.AAAATTCACCCAGCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCtt < 1:4503802/101‑1 (MQ=25)
cccccT.TTTTTGGCT..G..CG.CAAAAATCCCCCCCCCGGCGTATTTGCACAGGAAAAAAGCCCGGCGTTTTTCGTGGCCAAAATCCGCCGGGGGGAGTCCGCtt < 2:2904153/101‑1 (MQ=255)
cccTC.TTTTGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGc < 2:1794067/101‑1 (MQ=37)
ctcttttGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCgg > 1:5234252/4‑101 (MQ=37)
ctcttttGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCgg < 1:2725244/98‑1 (MQ=38)
tcttttGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGa > 1:1279760/3‑101 (MQ=37)
cttttGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGAGGAGTCCGCTTGCGGAc > 2:5195239/2‑101 (MQ=38)
ttttGGCTGCG..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGACg > 1:5724090/1‑101 (MQ=255)
||
GGGCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCCGCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTTTGGCT..G..C..C.AAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGACG > NC_014034/904834‑905025
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 31 ≤
ATCG
< 39 ≤
ATCG
|