New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1395433 =201 (1.060)112 (0.590) 42/130 9.7 0.40 intergenic (+245/‑686) RCAP_rcc01306/RCAP_rcc01307 Cas2 family CRISPR‑associated protein/hypothetical protein
?NC_014034 = 1397797 133 (0.460)intergenic (+101/+1797) RCAP_rcc01307/RCAP_rcc01309 hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

Only 100 of 221 total aligned reads displayed.

GCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC.......................................................................................................................................  <  NC_014034/1395473‑1395433
............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCGCCCGCGGGGGGAGCGACCT  <  NC_014034/1397797‑1397698
                                         |||||||||||||||||||||||||||||||||||                                                                                                    
cgccgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGG                                                                             >  1:1734069/8‑101 (MQ=11)
cgccgagTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGG                                                                             >  2:549163/8‑101 (MQ=2)
 gccgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGG                                                                            <  1:3869007/95‑1 (MQ=11)
 gccgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGG                                                                            >  1:4785185/7‑101 (MQ=11)
 gccgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGG                                                                            >  1:2743989/7‑101 (MQ=11)
  ccgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGg                                                                           >  1:3059185/6‑100 (MQ=11)
  ccgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGA                                                                           >  2:717554/6‑101 (MQ=11)
   cgggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                          >  1:2305748/5‑101 (MQ=11)
    gggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                         >  2:1512165/4‑101 (MQ=14)
     ggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                        >  2:3341576/3‑101 (MQ=31)
      gTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                       <  2:4697172/100‑1 (MQ=11)
       TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAg                                                                      >  2:499125/1‑100 (MQ=1)
       TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                      >  2:4190662/1‑101 (MQ=1)
       TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                      >  1:4525489/1‑101 (MQ=1)
        tTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACT                                                                     <  1:485874/100‑1 (MQ=1)
         TTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTG                                                                    >  1:875239/1‑101 (MQ=1)
            CGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAAT                                                                 >  1:2679353/1‑101 (MQ=1)
            CGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAAT                                                                 <  2:3052593/101‑1 (MQ=1)
            CGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAAT                                                                 >  2:5237643/1‑101 (MQ=1)
               TCCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTT                                                              >  1:3569634/1‑101 (MQ=1)
                CCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTTGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTG                                                             <  1:3652328/101‑1 (MQ=1)
                CCACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTG                                                             <  2:1821220/101‑1 (MQ=1)
                 CACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGA                                                            >  1:868097/1‑101 (MQ=1)
                 CACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGA                                                            >  2:4893935/1‑101 (MQ=1)
                  ACGCCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGAC                                                           <  2:2719512/101‑1 (MQ=1)
                     CCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTG                                                        >  2:743980/1‑101 (MQ=1)
                     CCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTG                                                        <  2:791799/101‑1 (MQ=1)
                     CCCCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTG                                                        <  1:3222582/101‑1 (MQ=1)
                       CCCGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCT                                                      <  1:1207236/101‑1 (MQ=1)
                         CGCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGA                                                    <  1:2502774/101‑1 (MQ=1)
                          GCGGGGGGAGCGACCCCCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGAT                                                   <  2:485282/101‑1 (MQ=1)
                          GCGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGAT                                                   <  1:5166939/101‑1 (MQ=1)
                           CGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATG                                                  >  2:5174974/1‑101 (MQ=1)
                           CGGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCAGCGGGGGGAGCGACTGAATCTTGACGTGCTGATG                                                  >  2:753145/1‑101 (MQ=1)
                            GGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGA                                                 >  2:2480091/1‑101 (MQ=1)
                            GGGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGA                                                 <  1:3341781/101‑1 (MQ=1)
                             GGGGGAGCGACCACCGGCCTTACCCAGATCGGCTATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAG                                                <  1:4982691/101‑1 (MQ=1)
                             GGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAG                                                >  2:1901204/1‑101 (MQ=1)
                             GGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAG                                                >  1:5363840/1‑101 (MQ=1)
                             GGGGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAG                                                >  1:377753/1‑101 (MQ=1)
                               GGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCG                                              <  2:5543028/101‑1 (MQ=1)
                               GGGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCG                                              <  2:3067406/101‑1 (MQ=1)
                                GGAGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGC                                             <  2:4525217/101‑1 (MQ=1)
                                  AGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGT                                           >  2:1246651/1‑101 (MQ=1)
                                  AGCGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAATTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGT                                           >  2:2947410/1‑101 (MQ=1)
                                    CGACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCA                                         <  2:1458956/101‑1 (MQ=1)
                                     GACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAG                                        >  1:1244502/1‑101 (MQ=1)
                                      ACCACCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGA                                       >  1:5317977/1‑101 (MQ=1)
                                       CCACCGGCCTTCCCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGAC                                      <  1:463914/101‑1 (MQ=1)
                                       CCACCGGCCTTACCCAGACCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGAC                                      <  2:1847966/101‑1 (MQ=1)
                                          CCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAG                                   <  1:4741519/101‑1 (MQ=1)
                                          CCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAG                                   <  1:1544321/101‑1 (MQ=1)
                                          CCGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAG                                   >  2:3251915/1‑101 (MQ=1)
                                           CGGCCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGT                                  <  1:1444547/101‑1 (MQ=1)
                                              CCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTC                               <  2:3199308/101‑1 (MQ=1)
                                              CCTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTC                               <  2:2667477/101‑1 (MQ=1)
                                               CTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              >  2:4524595/1‑101 (MQ=1)
                                               CTTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCG                              <  1:2221924/101‑1 (MQ=1)
                                                TTACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGA                             <  1:5021837/101‑1 (MQ=1)
                                                 TACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCATACAAGTTTCGAT                            >  1:2847410/1‑101 (MQ=1)
                                                 TACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGAT                            <  1:1703940/101‑1 (MQ=1)
                                                 TACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGAT                            <  2:787683/101‑1 (MQ=1)
                                                 TACCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGAT                            >  2:1035915/1‑101 (MQ=1)
                                                   CCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCC                          <  1:4061672/101‑1 (MQ=1)
                                                   CCCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCC                          <  1:5543933/101‑1 (MQ=1)
                                                    CCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCA                         <  2:5577290/101‑1 (MQ=1)
                                                    CCAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCA                         <  1:924422/101‑1 (MQ=1)
                                                     CAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCAC                        >  2:4111092/1‑101 (MQ=1)
                                                     CAGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCAC                        >  2:3610816/1‑101 (MQ=1)
                                                      cttccgatctTGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACG                       <  2:1645120/91‑1 (MQ=0)
                                                      AGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACG                       <  2:1395399/101‑1 (MQ=1)
                                                      AGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACG                       <  2:2809261/101‑1 (MQ=1)
                                                      AGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACG                       >  2:1195347/1‑101 (MQ=1)
                                                      AGATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACG                       >  1:803689/1‑101 (MQ=1)
                                                       GATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGC                      >  1:2320388/1‑101 (MQ=1)
                                                        ATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGGGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCc                     >  1:1896560/1‑100 (MQ=1)
                                                        ATCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCc                     >  2:2644087/1‑100 (MQ=1)
                                                         TCGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCcc                    >  1:2052954/1‑99 (MQ=1)
                                                          CGGCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCC                   >  1:3166857/1‑101 (MQ=1)
                                                            GCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCG                 <  2:5694396/101‑1 (MQ=1)
                                                            GCGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCG                 >  1:1220722/1‑101 (MQ=1)
                                                             CGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGC                >  2:1134355/1‑101 (MQ=1)
                                                             CGATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGC                >  2:4337365/1‑101 (MQ=1)
                                                              GATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCG               >  1:414611/1‑101 (MQ=1)
                                                               ATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGG              >  2:3711266/1‑101 (MQ=1)
                                                               ATGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGG              <  1:4894216/101‑1 (MQ=1)
                                                                TGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGagatcggaag             >  1:1645214/1‑91 (MQ=0)
                                                                TGTCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGG             >  2:22687/1‑101 (MQ=1)
                                                                  TCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGG           >  2:1047945/1‑101 (MQ=1)
                                                                  TCCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGG           >  1:571874/1‑101 (MQ=1)
                                                                   CCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGG          >  1:5232078/1‑101 (MQ=1)
                                                                   CCTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGG          <  1:4437100/101‑1 (MQ=1)
                                                                    CTTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGA         <  1:3890019/101‑1 (MQ=1)
                                                                     TTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAG        >  2:4215243/1‑101 (MQ=1)
                                                                     TTGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAG        <  1:717622/101‑1 (MQ=1)
                                                                      TGCCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGC       <  2:2043868/101‑1 (MQ=1)
                                                                       GCCGAGTTTCGATCCACTCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCG      <  2:5202177/101‑1 (MQ=0)
                                                                        CCGAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA     >  1:1081154/1‑101 (MQ=1)
                                                                           AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCT  <  2:3770490/101‑1 (MQ=1)
                                                                           AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCT  <  2:3099209/101‑1 (MQ=1)
                                         |||||||||||||||||||||||||||||||||||                                                                                                    
GCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC.......................................................................................................................................  <  NC_014034/1395473‑1395433
............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGAATCTTGACGTGCTGATGAGCGCGTCAGACAAGTTTCGATCCACGCGCCCGCGGGGGGAGCGACCT  <  NC_014034/1397797‑1397698

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG