New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395598	215 (1.120)	55 (0.290)	11/132	26.0	0.21	intergenic (+410/‑521)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1396506 =	193 (0.660)					coding (388/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CCGGCCTGCTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC................................................................................  >  NC_014034/1395556‑1395598 .............................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCTTTCGTGGGA  >  NC_014034/1396506‑1396551                                            ||||||||||||||||||||||||||||||||||                                               ggccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTG                        <  1:1453159/91‑1 (MQ=0)  gccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGG                       <  2:173591/92‑1 (MQ=0)   ccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA                      <  2:847664/93‑1 (MQ=0)   ccctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA                      >  1:572157/9‑101 (MQ=0)   cccgcgccCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA                      <  2:2241563/93‑1 (MQ=0)    cctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGct                     >  2:1164075/8‑99 (MQ=0)    cctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  1:2322968/94‑1 (MQ=0)    cctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGAT                     >  1:5534138/8‑101 (MQ=0)    cctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGAT                     <  1:3353650/94‑1 (MQ=0)     ctcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATC                    >  2:589980/7‑101 (MQ=0)      tcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCG                   <  2:5236399/96‑1 (MQ=1)      tcgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTACCCCCGCGGGGGCGTGGATCG                   >  2:103099/6‑101 (MQ=0)      ccgcaCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCG                   <  2:3499682/96‑1 (MQ=0)       cgcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                  >  1:2164725/5‑101 (MQ=1)        gcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                 <  1:1938396/98‑1 (MQ=1)        gcaCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGGGGGTCGAA                 >  2:1526367/4‑101 (MQ=0)         caCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                <  2:654011/99‑1 (MQ=1)         caCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                >  2:5455354/3‑101 (MQ=1)         caCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAA                >  1:2903384/3‑101 (MQ=1)          cCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               <  2:3670854/100‑1 (MQ=1)          aCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               >  1:3215625/2‑101 (MQ=1)          aCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGGGGGTCGAAAC               >  2:4506727/2‑101 (MQ=0)          aCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAAC               >  2:797617/2‑101 (MQ=1)          aCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAAC               >  1:4232267/2‑101 (MQ=1)          aCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGACTATGGCTGACGGGCCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC               >  2:986080/2‑101 (MQ=0)           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAACT              >  2:2467327/1‑101 (MQ=1)           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT              <  1:1817151/101‑1 (MQ=1)           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT              >  2:1414322/1‑101 (MQ=1)           CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT              <  2:1758998/101‑1 (MQ=1)           CGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT              <  1:416306/101‑1 (MQ=1)            GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTG             >  2:1919656/1‑101 (MQ=1)              CGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACTGCg           >  2:4708016/1‑100 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgt          <  1:471534/101‑3 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgt          <  2:4072245/101‑3 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgt          >  1:2898866/1‑99 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGGCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgt          >  2:2333436/1‑99 (MQ=1)               GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGAACCGCCCGTCCCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgt          >  2:4558519/1‑99 (MQ=0)                CTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtg         >  1:2856248/1‑98 (MQ=1)                CTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtg         >  1:5062185/1‑98 (MQ=1)                 cCCCCCGGCGGGGGCGGGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgc        <  1:2411658/100‑5 (MQ=0)                 cCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTGTGGCTGACGGACCCACCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgc        <  1:2333562/100‑5 (MQ=0)                 TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgc        >  1:2072009/1‑97 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgc        >  2:518954/1‑97 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgc        <  1:4599151/101‑5 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgc        >  1:2412541/1‑97 (MQ=1)                 TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgc        >  1:632564/1‑97 (MQ=1)                  CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgcg       <  1:262140/101‑6 (MQ=1)                   CCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgcgc      >  2:4271395/1‑95 (MQ=0)                   CCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgcgc      >  1:4199227/1‑95 (MQ=0)                   CCCCCGCGGGAGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgcgc      >  2:2689366/1‑95 (MQ=0)                    CCCGGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgcgcg     <  2:1691699/101‑8 (MQ=0)                    CCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgcgcg     <  1:5309422/101‑8 (MQ=0)                    CCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgcgcg     >  1:3514058/1‑94 (MQ=0)                       CGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgcgcgcca  <  2:3119825/101‑11 (MQ=0)                       CGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgtgcgcgcca  >  1:741302/1‑91 (MQ=0)                                            ||||||||||||||||||||||||||||||||||                                               CCGGCCTGCTCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC................................................................................  >  NC_014034/1395556‑1395598 .............................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCTTTCGTGGGA  >  NC_014034/1396506‑1396551 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG