New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396506 =	193 (1.000)	55 (0.290)	11/132	26.0	0.22	coding (388/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1396737	201 (0.690)					coding (619/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

TCCCACGAAAGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.............................................................................  <  NC_014034/1396551‑1396506 ................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATGACGGATC  <  NC_014034/1396737‑1396695                                               ||||||||||||||||||||||||||||||||||                                            tggcgcgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCG                        >  2:3119825/11‑101 (MQ=0) tggcgcgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCG                        <  1:741302/91‑1 (MQ=0)    cgcgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGG                     >  1:5309422/8‑101 (MQ=0)    cgcgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGG                     <  1:3514058/94‑1 (MQ=0)    cgcgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCCGGG                     >  2:1691699/8‑101 (MQ=0)     gcgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCTCCCGCGGGGG                    <  2:2689366/95‑1 (MQ=0)     gcgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGG                    <  2:4271395/95‑1 (MQ=0)     gcgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGG                    <  1:4199227/95‑1 (MQ=0)      cgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGG                   >  1:262140/6‑101 (MQ=1)       gcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGTGGGTCCGTCAGCCACAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGg                  >  1:2333562/5‑100 (MQ=0)       gcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCCCGCCCCCGCCGGGGGg                  >  1:2411658/5‑100 (MQ=0)       gcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGA                  <  1:2412541/97‑1 (MQ=1)       gcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGA                  <  1:632564/97‑1 (MQ=1)       gcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGA                  <  2:518954/97‑1 (MQ=1)       gcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGA                  <  1:2072009/97‑1 (MQ=1)       gcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGA                  >  1:4599151/5‑101 (MQ=1)        cacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAG                 <  1:2856248/98‑1 (MQ=1)        cacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAG                 <  1:5062185/98‑1 (MQ=1)         acGCAGTTTCGATCCACGCCCCCGCGGGGGGAGGGACGGGCGGTTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGC                <  2:4558519/99‑1 (MQ=0)         acGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGCCGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGC                <  2:2333436/99‑1 (MQ=1)         acGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGC                <  1:2898866/99‑1 (MQ=1)         acGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGC                >  1:471534/3‑101 (MQ=1)         acGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGC                >  2:4072245/3‑101 (MQ=1)          cGCAGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCG               <  2:4708016/100‑1 (MQ=1)            CAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC             <  2:1919656/101‑1 (MQ=1)             AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGGGCGACG            >  1:416306/1‑101 (MQ=1)             AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG            <  2:1414322/101‑1 (MQ=1)             AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG            >  2:1758998/1‑101 (MQ=1)             AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG            >  1:1817151/1‑101 (MQ=1)             AGTTTCGACCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG            <  2:2467327/101‑1 (MQ=1)              GTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGt           <  1:4232267/101‑2 (MQ=1)              GTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGt           <  2:797617/101‑2 (MQ=1)              GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGg           >  2:3670854/1‑100 (MQ=1)              GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGt           <  1:3215625/101‑2 (MQ=1)              GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGCCCGTCAGCCATAGTCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGt           <  2:986080/101‑2 (MQ=0)              GTTTCGACCCCCGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGt           <  2:4506727/101‑2 (MQ=0)               TTTCGATCCCCGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtg          <  1:2903384/101‑3 (MQ=1)               TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtg          <  2:5455354/101‑3 (MQ=1)               TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtg          >  2:654011/1‑99 (MQ=1)                TTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgc         >  1:1938396/1‑98 (MQ=1)                TTCGACCCCCGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgc         <  2:1526367/101‑4 (MQ=0)                 TCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgcg        <  1:2164725/101‑5 (MQ=1)                  CGATCCACGCCCCCGCGGGGGTAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgcga       <  2:103099/101‑6 (MQ=0)                  CGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGtgcgg       >  2:3499682/1‑96 (MQ=0)                  CGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgcga       >  2:5236399/1‑96 (MQ=1)                   GATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgcgag      <  2:589980/101‑7 (MQ=0)                    agCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgcgagg     <  2:1164075/99‑8 (MQ=0)                    ATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgcgagg     <  1:5534138/101‑8 (MQ=0)                    ATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgcgagg     >  1:3353650/1‑94 (MQ=0)                    ATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgcgagg     >  1:2322968/1‑94 (MQ=0)                     TCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgcgaggg    <  1:572157/101‑9 (MQ=0)                     TCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgcgaggg    >  2:847664/1‑93 (MQ=0)                     TCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGggcgcggg    >  2:2241563/1‑93 (MQ=0)                      CCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgcgagggc   >  2:173591/1‑92 (MQ=0)                       CACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGtgcgagggcc  >  1:1453159/1‑91 (MQ=0)                                               ||||||||||||||||||||||||||||||||||                                            TCCCACGAAAGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.............................................................................  <  NC_014034/1396551‑1396506 ................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATGACGGATC  <  NC_014034/1396737‑1396695 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG