New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	57 (0.220)	51 (0.200)	10/178	33.3	0.37	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
	?	NC_014034	= 2494052	120 (0.410)					intergenic (+100/‑142)	RCAP_rcc02319/RCAP_rcc02320	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

GATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC................................................  <  NC_014034/1640103‑1640006 .............................................................................................................CCCCCCGGGATATTTCGGGCAAGATGAAAGGCATCCG  <  NC_014034/2494052‑2494016                                                                                                   |||||||||||                                      GATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGC                                               <  2:4617250/101‑1 (MQ=1)  ATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCC                                              <  1:3642195/101‑1 (MQ=1)     TCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCC                                           <  2:2178613/101‑1 (MQ=1)      CGGCCCTGTTGGCGATCAGGATCTTTTGAACCATCGCGGTCCCCTTCGGCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCC                                          <  1:4463989/101‑1 (MQ=0)       GGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCG                                         <  2:2076472/101‑1 (MQ=1)         CCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGG                                       <  2:3741727/101‑1 (MQ=1)         CCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGG                                       <  2:4166059/101‑1 (MQ=1)         CCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGG                                       <  2:3734245/101‑1 (MQ=1)           CTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCC                                     <  2:5408863/101‑1 (MQ=1)            TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCC                                    <  2:1883853/101‑1 (MQ=1)            TGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCC                                    <  1:5709080/101‑1 (MQ=1)              TTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGTGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCC                                  <  2:2229651/101‑1 (MQ=1)              TTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCC                                  <  2:3891232/101‑1 (MQ=1)              TTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCC                                  <  2:2278260/101‑1 (MQ=1)              TTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCC                                  <  2:5063153/101‑1 (MQ=1)               TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                                 <  2:2568449/101‑1 (MQ=1)               TGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCC                                 <  1:862647/101‑1 (MQ=1)                 GCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGG                               <  2:3645167/101‑1 (MQ=1)                 GCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGG                               <  1:3363425/101‑1 (MQ=1)                  CGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGG                              <  1:5287381/101‑1 (MQ=1)                  CGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGG                              <  2:1735904/101‑1 (MQ=1)                   GATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGA                             <  2:4372618/101‑1 (MQ=1)                    ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                            <  2:4378264/101‑1 (MQ=1)                    ATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGAT                            <  1:5129836/101‑1 (MQ=1)                       AGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATT                         <  2:1656747/101‑1 (MQ=1)                       AGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATT                         <  1:2638362/101‑1 (MQ=1)                       AGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATT                         <  2:2324395/101‑1 (MQ=1)                        GGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTT                        <  1:3357683/101‑1 (MQ=1)                         GATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTg                       <  2:4042248/101‑2 (MQ=1)                         GATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTg                       <  1:3837554/101‑2 (MQ=1)                          ATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTgg                      <  1:5338137/101‑3 (MQ=1)                           TCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGG                     <  2:214927/101‑1 (MQ=1)                           TCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGG                     <  1:4020112/101‑1 (MQ=1)                           TCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGG                     <  2:862239/101‑1 (MQ=1)                            CTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGG                    <  2:5668158/101‑1 (MQ=1)                              TTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCA                  <  1:5701210/101‑1 (MQ=1)                              TTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCA                  <  1:3550492/101‑1 (MQ=1)                              TTTGAAACATCGCGGTCTCCTTCGTCAACGGCCAGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCA                  <  1:5005550/101‑1 (MQ=1)                                TGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAG                <  2:2435837/101‑1 (MQ=1)                                TGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAG                <  1:1453035/101‑1 (MQ=1)                                  AAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGAT              <  2:902808/101‑1 (MQ=1)                                  AAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGAT              <  2:3862500/101‑1 (MQ=1)                                   acCATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATG             <  1:2577321/99‑1 (MQ=1)                                   AACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATG             <  1:2655277/101‑1 (MQ=1)                                   AACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATG             <  1:2800620/101‑1 (MQ=1)                                   AACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATG             <  1:3555158/101‑1 (MQ=1)                                     CATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAA           <  2:4813007/101‑1 (MQ=1)                                     CATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAA           <  2:1762605/101‑1 (MQ=1)                                     CATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAA           <  2:372539/101‑1 (MQ=1)                                       TCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAG         <  2:1332332/101‑1 (MQ=1)                                        CGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGG        <  1:2828137/101‑1 (MQ=1)                                        CGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGG        <  2:852854/101‑1 (MQ=1)                                        CGCGGTCCCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGG        <  2:4136842/101‑1 (MQ=1)                                            GTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATg    <  1:622937/101‑2 (MQ=32)                                            GTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATg    <  1:1944186/101‑2 (MQ=32)                                            GTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATg    <  2:630612/101‑2 (MQ=32)                                            GTCGCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATg    <  2:5327193/101‑2 (MQ=17)                                              CTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATggg  <  2:1524005/101‑4 (MQ=34)                                              CTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGCTGCCCCCCGGGCCCCCCGGGATATTTGGGGCAAGATGAAAGGGATggg  <  2:98616/101‑4 (MQ=34)                                                                                                   |||||||||||                                      GATCTCGGCCCTGTTGGCGATCAGGATCTTTTGAAACATCGCGGTCTCCTTCGTCAACGGCCGGGGCGCTGCCCCGTGGCGGAAGTGGCGGGGGGCGC................................................  <  NC_014034/1640103‑1640006 .............................................................................................................CCCCCCGGGATATTTCGGGCAAGATGAAAGGCATCCG  <  NC_014034/2494052‑2494016 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG