New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1748592	165 (0.610)	42 (0.150)	3/186	41.1	0.33	intergenic (‑296/‑102)	RCAP_rcc01616/gppA	hypothetical protein/guanosine‑5'‑triphosphate,3'‑diphosphate pyrophosphatase
	?	NC_014034	= 2600942	3 (0.010)					intergenic (+4/‑137)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

GGCGGAGCCTCCGGCGGAGGTATTTAGGGCAAGATGAAACGGTGCCCCTTCATCTTGCCTCAAATATCCCGGGGGGAGGCCGCAGGCCCGGGGGCAGCGCCCCCCG....................................................................................................  >  NC_014034/1748487‑1748592 ...................................................................................................CCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGGCGGTGGC  <  NC_014034/2600942‑2600843                                                                                                                                                                                                                                                                                                gcgaaGCCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGA                           <  2:5115459/96‑1 (MQ=1)                                                                                  cgaaGCCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                          <  2:4512924/97‑1 (MQ=1)                                                                                  cgaaGCCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                          >  2:1946615/5‑101 (MQ=1)                                                                                  cgaaGCCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                          <  1:924825/97‑1 (MQ=1)                                                                                   gaaGCCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                         >  1:2222476/4‑101 (MQ=1)                                                                                    aaGCCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                        <  2:2476992/99‑1 (MQ=1)                                                                                    aaGCCGGGGGGAAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                        <  1:2349027/99‑1 (MQ=1)                                                                                     aGCCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                       <  2:237927/100‑1 (MQ=1)                                                                                     aGCCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                       >  2:4089916/2‑101 (MQ=1)                                                                                     aGCCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                       <  2:3792230/100‑1 (MQ=1)                                                                                       cggGGGGGCAGACCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                     <  1:670184/98‑1 (MQ=1)                                                                                       ccgGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                     >  1:3932484/4‑101 (MQ=1)                                                                                       ccgGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                     <  2:2305870/98‑1 (MQ=1)                                                                                       ccgGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                     <  2:2376523/98‑1 (MQ=1)                                                                                       ccgGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                     >  1:4342387/4‑101 (MQ=1)                                                                                        cgGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                    >  1:5048544/3‑101 (MQ=1)                                                                                        cgGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                    >  2:5279674/3‑101 (MQ=1)                                                                                        cgGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                    <  2:4922697/99‑1 (MQ=1)                                                                                        cgGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                    >  1:486596/3‑101 (MQ=1)                                                                                         gGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGC                   >  1:4054048/2‑101 (MQ=1)                                                                                          GGGGGCAGAGCCCCCCGTCCGTCAGATCTCNGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCG                  <  1:2879767/101‑1 (MQ=1)                                                                                           GGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGC                 <  1:815240/101‑1 (MQ=1)                                                                                            GGGCAGAGCGCCCCGTCCGTCAGATCTCGGCAAGAAGGGGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCC                <  1:3441322/101‑1 (MQ=0)                                                                                             cccccCGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC               <  1:4038704/96‑1 (MQ=1)                                                                                             GGCAGCCCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC               <  1:663031/101‑1 (MQ=1)                                                                                             GGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC               <  2:2627653/101‑1 (MQ=1)                                                                                             GGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC               >  1:5581309/1‑101 (MQ=1)                                                                                              GCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCG              <  2:5687015/101‑1 (MQ=1)                                                                                               CAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGC             >  1:1495740/1‑101 (MQ=1)                                                                                                 gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCGGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC           <  2:1968910/99‑1 (MQ=1)                                                                                                 gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC           >  2:310184/3‑101 (MQ=1)                                                                                                 gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC           <  2:4605287/99‑1 (MQ=1)                                                                                                 gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC           <  1:5614717/99‑1 (MQ=1)                                                                                                 gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC           >  2:5560037/3‑101 (MQ=1)                                                                                                 gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC           >  1:2065409/3‑101 (MQ=1)                                                                                                  gGCCCCCCGTCCGTCAGCTCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACG          <  2:5196594/100‑1 (MQ=1)                                                                                                  aGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACG          >  2:2263337/2‑101 (MQ=1)                                                                                                  aGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACG          <  2:689503/100‑1 (MQ=1)                                                                                                  aGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACG          <  2:963279/100‑1 (MQ=1)                                                                                                   GCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGG         <  2:2643373/101‑1 (MQ=1)                                                                                                   GCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGG         <  1:538744/101‑1 (MQ=1)                                                                                                   GCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGG         <  1:5340959/101‑1 (MQ=1)                                                                                                                                                                                                                GGCGGAGCCTCCGGCGGAGGTATTTAGGGCAAGATGAAACGGTGCCCCTTCATCTTGCCTCAAATATCCCGGGGGGAGGCCGCAGGCCCGGGGGCAGCGCCCCCCG....................................................................................................  >  NC_014034/1748487‑1748592 ...................................................................................................CCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGGCGGTGGC  <  NC_014034/2600942‑2600843 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG