New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 233017551 (0.180)35 (0.120) 5/198 40.1 0.37 intergenic (+150/+162) RCAP_rcc02161/mrcA hypothetical protein/penicillin‑binding protein 1A
?NC_014034 = 2995639 68 (0.230)intergenic (+179/+41) RCAP_rcc02802/RCAP_rcc02803 membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

CGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.G....................................................................................................  >  NC_014034/2330075‑2330175
.....................................................................................................GGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTG  <  NC_014034/2995639‑2995540
                                                                                                                                                                                                          
 GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATTGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GG                                                                                                     <  2:3593150/101‑1 (MQ=1)
  GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGG                                                                                                    >  2:4913316/1‑101 (MQ=1)
  GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGG                                                                                                    <  1:2805996/101‑1 (MQ=1)
   CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGG                                                                                                   <  2:4064781/101‑1 (MQ=1)
   CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGG                                                                                                   >  2:3763056/1‑101 (MQ=1)
   CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGG                                                                                                   <  2:370273/101‑1 (MQ=1)
   CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGG                                                                                                   <  1:663828/101‑1 (MQ=1)
   CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGG                                                                                                   <  2:2732250/101‑1 (MQ=1)
   CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGG                                                                                                   <  2:2024341/101‑1 (MQ=1)
     TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGGgg                                                                                                 >  2:5355440/1‑99 (MQ=1)
     TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGGgg                                                                                                 >  2:4174598/1‑99 (MQ=1)
     TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGGgc                                                                                                 <  2:907303/101‑3 (MQ=1)
       GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGGgctc                                                                                               <  1:2245179/101‑5 (MQ=31)
        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGGggtcc                                                                                              >  1:4259347/1‑96 (MQ=1)
        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGGgctcc                                                                                              <  2:2358092/101‑6 (MQ=32)
        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGGgctcc                                                                                              <  2:1775048/101‑6 (MQ=32)
          TCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCGGGGC.GGGGgggccgc                                                                                            >  2:876673/1‑94 (MQ=0)
          TCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGG.GGGGggggggc                                                                                            >  2:1041105/1‑94 (MQ=0)
          TCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGC                                                                                             <  2:1816885/101‑1 (MQ=34)
           CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCC                                                                                            <  2:2465154/101‑1 (MQ=34)
           CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCC                                                                                            <  1:1662889/101‑1 (MQ=34)
           CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCC                                                                                            <  1:592700/101‑1 (MQ=34)
           CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCC                                                                                            <  1:3957935/101‑1 (MQ=34)
           CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.GGGGggcccgcc                                                                                           >  2:3696381/1‑93 (MQ=1)
            CGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCC                                                                                           <  2:3195529/101‑1 (MQ=34)
             GCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCC                                                                                          <  2:4259087/101‑1 (MQ=34)
               CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACGCGGGCGGGGGCTCCGCCCCCg                                                                                        <  1:3275975/101‑2 (MQ=21)
                 AGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCgcc                                                                                      >  1:1718856/1‑98 (MQ=25)
                 AGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCgca                                                                                      <  1:5603161/101‑4 (MQ=37)
                  GGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCgcac                                                                                     <  1:1982163/101‑5 (MQ=38)
                  GGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCgcac                                                                                     <  2:5660430/101‑5 (MQ=38)
                     CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCG.CCCCCGCACCCC                                                                                 <  2:2479635/101‑1 (MQ=38)
                     CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCG.CCCCCGCACCCC                                                                                 <  1:1333326/101‑1 (MQ=38)
                      GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                <  2:2770697/101‑1 (MQ=38)
                      GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                <  2:228834/101‑1 (MQ=38)
                                                                                                                                                                                                          
CGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC.G....................................................................................................  >  NC_014034/2330075‑2330175
.....................................................................................................GGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTG  <  NC_014034/2995639‑2995540

Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG