New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2330290	36 (0.140)	46 (0.180)	27/180	22.9	0.42	intergenic (+265/+47)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	3276374 =	90 (0.310)					intergenic (‑126/+123)	RCAP_rcc03082/RCAP_rcc03083	lipoprotein/membrane bound YbgT‑like protein
Rejected: Position hash score below cutoff.

CCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCC...........................................................................................  >  NC_014034/2330181‑2330290 ....................................................................................................CCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGCGCGGCCGCGCGGCGAAACAAAGGACCGACCGGGCAGCCCCCCGGTCGGCCAGTGAACCCGAAA  >  NC_014034/3276374‑3276464                                                                                                                                                                                                                      GCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGG                                                                                           >  1:1499983/1‑101 (MQ=1)            GCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGG                                                                                           >  1:2181652/1‑101 (MQ=1)             CGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGGCCGGG                                                                                          >  1:2038793/1‑101 (MQ=1)             CGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGCCCGGG                                                                                          >  1:3223310/1‑101 (MQ=1)              GTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG                                                                                         >  1:2207657/1‑101 (MQ=1)              GTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG                                                                                         >  1:5526742/1‑101 (MQ=1)              GTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG                                                                                         >  2:3116455/1‑101 (MQ=1)               TATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGG                                                                                        >  1:333753/1‑101 (MQ=1)               TATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGG                                                                                        >  1:3680493/1‑101 (MQ=1)               TATGTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGG                                                                                        <  2:5421633/101‑1 (MQ=1)                ATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGC                                                                                       >  1:2806085/1‑101 (MQ=1)                 TTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCG                                                                                      <  2:1221700/101‑1 (MQ=1)                  TTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGG                                                                                     <  1:5424391/101‑1 (MQ=1)                   TGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGA                                                                                    <  1:2344184/101‑1 (MQ=1)                     CGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGC                                                                                  <  2:1540063/101‑1 (MQ=1)                     CGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCAGCTTTCACCTGTGGCCAAAGATCCCGCGGGTCCGGGGGCGGAGC                                                                                  >  2:5460692/1‑101 (MQ=0)                       CCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCC                                                                                <  2:1653667/101‑1 (MQ=1)                        CAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCC                                                                               <  1:3681417/101‑1 (MQ=1)                        CAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCC                                                                               <  2:3702726/101‑1 (MQ=1)                        CAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGGCCGGGGGCGGAGCCCC                                                                               >  2:1111262/1‑101 (MQ=1)                         AAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCC                                                                              <  1:5354894/101‑1 (MQ=1)                          AGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCG                                                                             >  2:167970/1‑101 (MQ=1)                          AGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCG                                                                             >  1:4528666/1‑101 (MQ=1)                          AGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCG                                                                             <  1:4511114/101‑1 (MQ=1)                          AGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCG                                                                             >  1:3168725/1‑101 (MQ=1)                           GAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGG                                                                            >  1:5582469/1‑101 (MQ=1)                           GAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCAGGGGGCGGAGCCCCCGG                                                                            >  2:956882/1‑101 (MQ=1)                           GAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGGCCGGGGGCGGAGCCCCCGG                                                                            >  2:2072823/1‑101 (MQ=1)                            AAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATTACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGGCCCCGGC                                                                           >  1:2955539/1‑101 (MQ=0)                             AAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCG                                                                          >  1:974954/1‑101 (MQ=1)                             AAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCG                                                                          >  1:750711/1‑101 (MQ=1)                             AAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCG                                                                          >  1:5087930/1‑101 (MQ=1)                              AAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGGCCCCGGCGG                                                                         >  2:612813/1‑101 (MQ=1)                              AAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGG                                                                         >  2:5450849/1‑101 (MQ=1)                                AGCCGGTGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGg                                                                       >  1:4496730/1‑100 (MQ=1)                                  CCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGGGGAGCCCCCGGCGGGggg                                                                     >  2:4507875/1‑98 (MQ=0)                                  CCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGggg                                                                     >  1:757461/1‑98 (MQ=1)                                   CGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGgggc                                                                    >  2:3376875/1‑97 (MQ=1)                                      GGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGggggcgg                                                                 >  2:4907420/1‑94 (MQ=0)                                        CGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGCGGCGCGg                                                               >  1:5446968/1‑100 (MQ=9)                                         GCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGaggc                                                              <  2:711806/101‑5 (MQ=11)                                          CGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGCCGagggc                                                             >  1:3725784/1‑96 (MQ=0)                                           GCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCGGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGaggcat                                                            <  1:2703923/101‑7 (MQ=12)                                            CATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGaggcatc                                                           <  1:780240/101‑8 (MQ=18)                                            CATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGCCGCGgcggc                                                           >  1:1208954/1‑96 (MQ=0)                                             ATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGTGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGaggcatcg                                                          <  2:1878473/101‑9 (MQ=19)                                                                                                                                                                                                           CCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCC...........................................................................................  >  NC_014034/2330181‑2330290 ....................................................................................................CCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCGCGCGGCCGCGCGGCGAAACAAAGGACCGACCGGGCAGCCCCCCGGTCGGCCAGTGAACCCGAAA  >  NC_014034/3276374‑3276464 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG