New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2493986 =	189 (0.720)	41 (0.160)	8/176	34.7	0.17	intergenic (+34/‑208)	RCAP_rcc02319/RCAP_rcc02320	hypothetical protein/hypothetical protein
	?	NC_014034	3011299 =	220 (0.750)					intergenic (+98/+44)	purK/RCAP_rcc02822	phosphoribosylaminoimidazole carboxylase ATPase subunit/lipase
Rejected: Position hash score below cutoff.

CATCTTGCTGCAAATATCCCGGGGGG....................................................................................................  <  NC_014034/2494011‑2493986 ................TCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCACCGGCTCGAACT  >  NC_014034/3011299‑3011398                                                                                                                                caccttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCG                           >  2:76907/11‑101 (MQ=2) caccttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCG                           >  2:3199102/11‑101 (MQ=2)  acctttggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGC                          >  1:4915056/10‑101 (MQ=2)  accttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGC                          >  2:2005220/10‑101 (MQ=2)  accttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGC                          >  2:4946314/10‑101 (MQ=2)   ccttgggaaAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCC                         <  1:341660/92‑1 (MQ=0)   ccttgggaCAAATATCCCGGGGGGAGCCTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCC                         <  1:2872608/93‑1 (MQ=2)   ccttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCC                         >  2:5591519/9‑101 (MQ=2)   ccttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCC                         >  2:4379951/9‑101 (MQ=2)    cttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCC                        >  2:5463700/8‑101 (MQ=2)    cttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCC                        >  1:5764743/8‑101 (MQ=2)    cttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCC                        >  2:2426814/8‑101 (MQ=2)      tgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCACCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCA                      <  2:3815870/96‑1 (MQ=2)      ggggaCAAATATCCGGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCA                      <  1:4515385/96‑1 (MQ=2)       gggaaAAATATCCCGGGGGGAGCCTTGCCGCAGCCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAG                     <  1:757973/96‑1 (MQ=0)        ggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGC                    >  1:2209586/4‑101 (MQ=11)         gaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCC                   <  2:982655/99‑1 (MQ=11)          aCAAATATCCGGGGGGGAGACTTGCCTCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCC                  <  1:3476289/100‑1 (MQ=2)          aCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCC                  >  2:1275783/2‑101 (MQ=11)          aCAAATACCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGCCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCC                  <  1:1618895/100‑1 (MQ=2)           CAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGGCGCTGCAAGGCCGCGCCCCAGCCgg                 >  1:1336847/1‑99 (MQ=1)           CAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCG                 >  1:2658706/1‑101 (MQ=1)           CAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAAGCCGCGCGCCCGCCCG                 >  2:575488/1‑101 (MQ=0)            AAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCCAGGCCGCGCCCCAGCCCGG                >  2:5069501/1‑101 (MQ=1)            AAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGG                >  2:5218514/1‑101 (MQ=1)            AAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGG                >  2:3121304/1‑101 (MQ=1)            AAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGG                >  2:1071177/1‑101 (MQ=1)            AAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGG                >  2:1971044/1‑101 (MQ=1)            AAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGG                >  2:1121586/1‑101 (MQ=1)             AATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGC               >  2:4675004/1‑101 (MQ=1)             AATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGC               >  1:1793658/1‑101 (MQ=1)             AATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGC               >  1:1426029/1‑101 (MQ=1)             AATACCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGC               <  1:4426786/101‑1 (MQ=1)              ATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCA              >  1:4080563/1‑101 (MQ=1)              ATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCA              >  1:2772534/1‑101 (MQ=1)              ATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCA              >  2:5616261/1‑101 (MQ=1)               TATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGGCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCAC             >  2:1114262/1‑101 (MQ=1)               TATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCAC             >  1:492530/1‑101 (MQ=1)                ATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCACC            >  2:1413700/1‑101 (MQ=1)                ATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCACC            >  2:1132709/1‑101 (MQ=1)                ATCCCGGGGGGAGACTTGCCGCAGGCAAGAGCGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCACC            >  1:5127414/1‑101 (MQ=1)                                                                                                                                CATCTTGCTGCAAATATCCCGGGGGG....................................................................................................  <  NC_014034/2494011‑2493986 ................TCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCACCGGCTCGAACT  >  NC_014034/3011299‑3011398 Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 38 ≤  ATCG