New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 392463	55 (0.190)	30 (0.110)	2/196	43.4	0.32	intergenic (‑111/+32)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	900805 =	71 (0.240)					intergenic (‑134/‑153)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
Rejected: Position hash score below cutoff.

CTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC....................................................................................................  >  NC_014034/392362‑392463 ....................................................................................................CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCCAA  >  NC_014034/900805‑900904                                                                                                                                                                                                                                                                                      cgCCCGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGG                            >  2:534294/3‑101 (MQ=21)                                                                              CCGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCA                         >  1:5407368/1‑101 (MQ=37)                                                                               CGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAA                        >  1:4464612/1‑101 (MQ=35)                                                                               CGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAA                        >  1:1072501/1‑101 (MQ=35)                                                                               CGGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAA                        >  1:2056441/1‑101 (MQ=35)                                                                                GGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAAC                       >  2:519776/1‑101 (MQ=34)                                                                                GGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAAC                       >  2:3004985/1‑101 (MQ=34)                                                                                GGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAAC                       >  1:1760027/1‑101 (MQ=34)                                                                                GGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAAC                       >  2:1949083/1‑101 (MQ=34)                                                                                GGGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAAC                       >  1:549300/1‑101 (MQ=34)                                                                                 GGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACT                      >  2:1132746/1‑101 (MQ=34)                                                                                 GGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACT                      >  1:2827579/1‑101 (MQ=34)                                                                                 GGGGTGCGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACT                      >  1:5289898/1‑101 (MQ=34)                                                                                     gggGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGG                  <  1:3814437/98‑1 (MQ=11)                                                                                       CGGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCT                >  2:1160163/1‑101 (MQ=11)                                                                                       CGGGGGCGG.GCCCCCCGCGGGTCGCCCCGGCCCTGCCAGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCT                <  2:2827418/101‑1 (MQ=0)                                                                                        GGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA               <  1:5356380/101‑1 (MQ=1)                                                                                        GGGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA               >  2:3388890/1‑101 (MQ=1)                                                                                         GGGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAG              >  2:2527788/1‑101 (MQ=1)                                                                                          GGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGc             >  2:1470324/1‑100 (MQ=1)                                                                                          GGGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGA             >  2:3152631/1‑101 (MQ=1)                                                                                           ggggggcCCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGA             <  1:2980593/94‑1 (MQ=0)                                                                                           GGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCGCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAG            >  2:5001338/1‑101 (MQ=1)                                                                                           GGCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAG            >  1:4701949/1‑101 (MQ=1)                                                                                            gggggagCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAG            <  1:1727087/94‑1 (MQ=1)                                                                                            GCGGAG.CCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGT           >  2:2668413/1‑101 (MQ=1)                                                                                             gcggaCCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGT           <  2:4928947/96‑1 (MQ=1)                                                                                               ggagCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCG         >  2:3430026/5‑101 (MQ=1)                                                                                               ggagCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCG         <  2:3498045/97‑1 (MQ=1)                                                                                                    CCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCC    >  2:4568703/1‑101 (MQ=1)                                                                                                                                                                                                            CTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC....................................................................................................  >  NC_014034/392362‑392463 ....................................................................................................CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAGAGTCGGCGCCAA  >  NC_014034/900805‑900904 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG