New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	432407 =	230 (0.840)	42 (0.150)	3/188	41.3	0.26	intergenic (+10/+138)	RCAP_rcc00403/RCAP_rcc00404	hypothetical protein/Sua5/YciO/YrdC/YwlC family protein
	?	NC_014034	= 2600943	3 (0.010)					intergenic (+5/‑136)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

TTCACCCCCGGGATATTTGGGGCAAGATGAAACGAAGCCCGGATCGGCTTTCATCTTGCCTCAAATATCCCGGGGGGAGTCCGCAGACGGGGGGCAGCGCCCCCC....................................................................................................  <  NC_014034/432511‑432407 ...................................................................................................CCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGGCGGTGG  <  NC_014034/2600943‑2600844                                                                                                                                                                                                                                                                                               gcgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGA                          <  2:5115459/94‑1 (MQ=1)                                                                                  cgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                         <  2:4512924/95‑1 (MQ=1)                                                                                  cgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                         >  2:1946615/7‑101 (MQ=1)                                                                                  cgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                         <  1:924825/95‑1 (MQ=1)                                                                                   gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        >  1:2222476/6‑101 (MQ=1)                                                                                    aagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                       <  2:2476992/97‑1 (MQ=1)                                                                                    aagcCGGGGGGAAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                       <  1:2349027/97‑1 (MQ=1)                                                                                     agcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                      <  2:237927/98‑1 (MQ=1)                                                                                     agcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                      >  2:4089916/4‑101 (MQ=1)                                                                                     agcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                      <  2:3792230/98‑1 (MQ=1)                                                                                       cgGGGGGGCAGACCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                    <  1:670184/99‑1 (MQ=1)                                                                                       cCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                    >  1:3932484/2‑101 (MQ=1)                                                                                       cCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                    <  2:2305870/100‑1 (MQ=1)                                                                                       cCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                    <  2:2376523/100‑1 (MQ=1)                                                                                       cCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                    >  1:4342387/2‑101 (MQ=1)                                                                                        CGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                   >  1:5048544/1‑101 (MQ=1)                                                                                        CGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                   >  2:5279674/1‑101 (MQ=1)                                                                                        CGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                   <  2:4922697/101‑1 (MQ=1)                                                                                        CGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                   >  1:486596/1‑101 (MQ=1)                                                                                         GGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGC                  >  1:4054048/1‑101 (MQ=1)                                                                                          GGGGGCAGAGCCCCCCGTCCGTCAGATCTCNGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCG                 <  1:2879767/101‑1 (MQ=1)                                                                                           GGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGC                <  1:815240/101‑1 (MQ=1)                                                                                            GGGCAGAGCGCCCCGTCCGTCAGATCTCGGCAAGAAGGGGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCC               <  1:3441322/101‑1 (MQ=0)                                                                                             cccccCGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC              <  1:4038704/96‑1 (MQ=1)                                                                                             GGCAGCCCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC              <  1:663031/101‑1 (MQ=1)                                                                                             GGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC              <  2:2627653/101‑1 (MQ=1)                                                                                             GGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC              >  1:5581309/1‑101 (MQ=1)                                                                                              GCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCG             <  2:5687015/101‑1 (MQ=1)                                                                                               CAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGC            >  1:1495740/1‑101 (MQ=1)                                                                                                 gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCGGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          <  2:1968910/99‑1 (MQ=1)                                                                                                 gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          >  2:310184/3‑101 (MQ=1)                                                                                                 gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          <  2:4605287/99‑1 (MQ=1)                                                                                                 gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          <  1:5614717/99‑1 (MQ=1)                                                                                                 gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          >  2:5560037/3‑101 (MQ=1)                                                                                                 gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          >  1:2065409/3‑101 (MQ=1)                                                                                                  gGCCCCCCGTCCGTCAGCTCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACG         <  2:5196594/100‑1 (MQ=1)                                                                                                  aGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACG         >  2:2263337/2‑101 (MQ=1)                                                                                                  aGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACG         <  2:689503/100‑1 (MQ=1)                                                                                                  aGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACG         <  2:963279/100‑1 (MQ=1)                                                                                                   GCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGG        <  2:2643373/101‑1 (MQ=1)                                                                                                   GCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGG        <  1:538744/101‑1 (MQ=1)                                                                                                   GCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGG        <  1:5340959/101‑1 (MQ=1)                                                                                                                                                                                                               TTCACCCCCGGGATATTTGGGGCAAGATGAAACGAAGCCCGGATCGGCTTTCATCTTGCCTCAAATATCCCGGGGGGAGTCCGCAGACGGGGGGCAGCGCCCCCC....................................................................................................  <  NC_014034/432511‑432407 ...................................................................................................CCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGGCGGTGG  <  NC_014034/2600943‑2600844 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG