New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 510074	94 (0.340)	48 (0.170)	16/192	30.6	0.51	intergenic (+61/+126)	RCAP_rcc00475/RCAP_rcc00476	acyl‑CoA dehydrogenase domain‑containing protein/hypothetical protein
	?	NC_014034	= 1253888	NA (NA)					intergenic (+46/+45)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
Rejected: Position hash score below cutoff.

GGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCGCCCCGGGCTTGCGCCCGGGGCGACCCGCCGGGGGCTCCGCCCCCG....................................................................................................  >  NC_014034/509973‑510074 ..................................................................................................CCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGCACCAT  <  NC_014034/1253888‑1253789                                                                                                                                                                                                                                                                            CTTGCG.CCGAGGCGACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGC                                      <  1:4571124/101‑1 (MQ=14)                                                                    ttcgCCGGGGCGACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGC                                    <  2:2428622/97‑1 (MQ=17)                                                                    ttcgCCGAGGCGACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGC                                    <  1:4817206/97‑1 (MQ=32)                                                                    ttcgCCGAGGCGACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGC                                    <  2:3995594/97‑1 (MQ=32)                                                                      cgCCGAGGCGACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAG                                  <  2:3316840/99‑1 (MQ=32)                                                                      cgCCGAGGCGACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAG                                  <  1:5399599/99‑1 (MQ=32)                                                                       gCCGAGGCGACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGC                                 <  2:3296169/100‑1 (MQ=32)                                                                       gCCGAGGCGACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGC                                 <  2:5611123/100‑1 (MQ=32)                                                                         cgaGGCGACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCG                               <  1:3789821/98‑1 (MQ=32)                                                                          gaGGCGACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGTAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGG                              <  1:143173/99‑1 (MQ=17)                                                                            GGCGACCCGGCGGGGGCTCCGCCCCCGCCCCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTC                            <  2:2926833/101‑1 (MQ=17)                                                                             GCGGCCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCT                           <  1:1552199/101‑1 (MQ=17)                                                                             GCGACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCT                           <  2:3142334/101‑1 (MQ=32)                                                                              CGACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTG                          <  2:5610371/101‑1 (MQ=32)                                                                               gcCCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGG                         <  1:1740969/99‑1 (MQ=17)                                                                               GACCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGG                         <  1:2161639/101‑1 (MQ=32)                                                                               GACCCGGCGGGGGCTCCGCCCCCGCACCCACGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGG                         >  2:4308440/1‑101 (MQ=17)                                                                                 CCCGGCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAA                       <  2:3554826/101‑1 (MQ=32)                                                                                   cggCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCTGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGC                     <  2:3983219/98‑1 (MQ=17)                                                                                   cggCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGC                     <  1:2245452/98‑1 (MQ=32)                                                                                    ggCGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCC                    <  2:3521661/99‑1 (MQ=31)                                                                                      CGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGA                  <  2:650778/101‑1 (MQ=1)                                                                                      CGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGA                  <  1:3367476/101‑1 (MQ=1)                                                                                      CGGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGA                  <  1:3619821/101‑1 (MQ=1)                                                                                       tGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAG                 >  1:620523/2‑101 (MQ=1)                                                                                       ggtgggcCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAG                 <  2:1269995/94‑1 (MQ=0)                                                                                       GGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAG                 >  2:5185018/1‑101 (MQ=1)                                                                                       GGGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGGTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAG                 >  2:3528109/1‑101 (MQ=1)                                                                                        GGGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGC                <  1:867335/101‑1 (MQ=1)                                                                                         GGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCT               >  2:184310/1‑101 (MQ=1)                                                                                         GGGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCT               <  1:5609830/101‑1 (MQ=1)                                                                                          GGCTCCGCCCCCGCCCCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTT              <  1:5707759/101‑1 (MQ=1)                                                                                          GGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTT              >  2:2659941/1‑101 (MQ=1)                                                                                          GGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTT              <  2:4611253/101‑1 (MQ=1)                                                                                          GGCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCCAAGGCTCAGCCGGTCTGGAAGCCGAGCTT              >  1:1623746/1‑101 (MQ=0)                                                                                           GCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTG             <  2:4237004/101‑1 (MQ=1)                                                                                           GCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTG             <  2:4540525/101‑1 (MQ=1)                                                                                           GCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTG             >  1:604756/1‑101 (MQ=1)                                                                                           GCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTG             <  2:5655651/101‑1 (MQ=1)                                                                                           GCTCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTG             >  2:2296930/1‑101 (MQ=1)                                                                                             TCCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGCCTGGAAGCCGAGCTTGCC           >  1:4407218/1‑101 (MQ=1)                                                                                              CCGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCC          >  1:2768421/1‑101 (MQ=1)                                                                                               CGCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCA         >  2:2879266/1‑101 (MQ=1)                                                                                                GCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAG        >  2:5495142/1‑101 (MQ=1)                                                                                                GCCCCCGCACCCCCGAGGTATGTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAG        >  1:3287476/1‑101 (MQ=1)                                                                                                 CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGC       <  2:3610669/101‑1 (MQ=1)                                                                                                 CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGC       >  1:1648087/1‑101 (MQ=1)                                                                                                  CCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGCA      >  1:3721486/1‑101 (MQ=1)                                                                                                                                                                                                            GGTCCGAGGGGGTGATGGGGCTCTCGGCCGATCAGTTCTGAGCGGCAGGGGATTTCGCCCCGGGCTTGCGCCCGGGGCGACCCGCCGGGGGCTCCGCCCCCG....................................................................................................  >  NC_014034/509973‑510074 ..................................................................................................CCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGCACCAT  <  NC_014034/1253888‑1253789 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG