New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 565336	260 (0.930)	73 (0.260)	19/192	28.7	0.35	intergenic (+151/+11)	RCAP_rcc00526/RCAP_rcc00527	dimethylglycine dehydrogenase/family 25 glycosyl hydrolase
	?	NC_014034	2600956 =	12 (0.040)					intergenic (+18/‑123)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

TCGCAAGGGCGTATTTGGACCAAGAAAAAGCGGGCGTGTTTTTTCTTGGTGAAAATACGCCGGGGGGAGACTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCC....................................................................................................  >  NC_014034/565233‑565336 ....................................................................................................CCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGAC  >  NC_014034/2600956‑2601055                                                                                                                                                                                                                                                                                  gaaTTGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTT                                    >  1:4513103/4‑101 (MQ=255)                                                                     gaaTTGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTT                                    >  1:164816/4‑101 (MQ=255)                                                                     gaaTTGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTT                                    >  1:3390755/4‑101 (MQ=255)                                                                      aaTTGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTG                                   <  2:877731/99‑1 (MQ=2)                                                                      aaTTGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTG                                   >  2:5689641/3‑101 (MQ=255)                                                                      aaTTGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTG                                   >  1:3194401/3‑101 (MQ=2)                                                                       aTTGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGC                                  >  2:5151804/2‑101 (MQ=9)                                                                        TTGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCT                                 >  2:4437105/1‑101 (MQ=12)                                                                         TGGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGTCTTGCTT                                <  2:4664953/101‑1 (MQ=255)                                                                         TGGCCAAAGCCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTT                                <  2:481418/101‑1 (MQ=0)                                                                          GGCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTG                               >  2:2395703/1‑101 (MQ=2)                                                                           GCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGT                              <  1:3839098/101‑1 (MQ=0)                                                                           GCCAAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGT                              <  1:2477134/101‑1 (MQ=0)                                                                           GCCAAAGGCCAAG.GGGGGGCAGCGCCCCCCGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGT                              <  1:3176813/101‑1 (MQ=255)                                                                            ccaAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTT                             >  2:3451833/4‑101 (MQ=2)                                                                             caAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTT                            >  2:5133311/3‑101 (MQ=2)                                                                             caAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTT                            <  1:3793034/99‑1 (MQ=2)                                                                             caAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTT                            >  1:5595531/3‑101 (MQ=2)                                                                             caAAGGCCAAG.GGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTT                            <  2:3588685/99‑1 (MQ=2)                                                                              aagGGCAAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                           <  2:1142806/98‑1 (MQ=0)                                                                              aAAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                           >  2:4720530/2‑101 (MQ=11)                                                                               AAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGGTTGGTTGG                          >  2:5671817/1‑101 (MQ=2)                                                                               AAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGG                          >  2:4633176/1‑101 (MQ=11)                                                                               AAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGG                          >  1:4599411/1‑101 (MQ=11)                                                                               AAGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGG                          >  2:3194569/1‑101 (MQ=11)                                                                               AAGGCCAAG.GGGGGGCAGCGCCCCCTCCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGG                          <  1:4143053/101‑1 (MQ=2)                                                                               AAGGCAAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGG                          <  2:1457353/101‑1 (MQ=1)                                                                                AGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGC                         >  1:5557804/1‑101 (MQ=14)                                                                                AGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGC                         >  1:1546090/1‑101 (MQ=14)                                                                                AGGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGC                         >  1:2989701/1‑101 (MQ=14)                                                                                 GGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCT                        >  1:1798041/1‑101 (MQ=11)                                                                                 GGCCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCT                        <  2:4512831/101‑1 (MQ=11)                                                                                 GGCCAAG.GGGGGGCGGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCT                        <  1:4528566/101‑1 (MQ=0)                                                                                  GCCAAG.GGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTG                       <  1:2175892/101‑1 (MQ=1)                                                                                   CCAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTGTGCTGC                      >  1:932469/1‑101 (MQ=2)                                                                                    CAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                     >  1:1781780/1‑101 (MQ=11)                                                                                    CAAGA.GGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                     >  2:1988419/1‑101 (MQ=11)                                                                                     caaaaGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                     >  2:4907174/6‑101 (MQ=11)                                                                                      aagaGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGGGG                    >  2:5077218/5‑101 (MQ=1)                                                                                      aagaGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGG                    >  1:3393829/5‑101 (MQ=1)                                                                                       agaGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGC                   >  2:540458/4‑101 (MQ=1)                                                                                       agaGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGC                   >  2:1221124/4‑101 (MQ=1)                                                                                       agaGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGC                   >  1:5527208/4‑101 (MQ=1)                                                                                        gaGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCG                  >  1:423823/3‑101 (MQ=1)                                                                                         aGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTTGCTGCGGCGC                 >  2:5041846/2‑101 (MQ=1)                                                                                          ggccccccccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCA                <  1:254393/91‑1 (MQ=2)                                                                                          ggcccccGCGCCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCA                <  1:1518775/94‑1 (MQ=0)                                                                                           gcgccccccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAG               <  2:3108784/92‑1 (MQ=2)                                                                                           GGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAG               >  2:4030905/1‑101 (MQ=1)                                                                                           GGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAG               >  1:3844535/1‑101 (MQ=1)                                                                                             GGCAGCGCCCCCTGCCCCGCCAGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCG             >  1:4266247/1‑101 (MQ=1)                                                                                               gAGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC           <  2:731745/100‑1 (MQ=1)                                                                                               cccccCCCCCCCCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC           <  2:2212510/96‑1 (MQ=2)                                                                                               CAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC           >  1:2198474/1‑101 (MQ=1)                                                                                                ccccCCCCCCCCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT          <  1:2084964/97‑1 (MQ=2)                                                                                                AGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGGGCAGCGGCT          >  2:4645871/1‑101 (MQ=1)                                                                                                AGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGGGCAGCGGCT          >  2:4497780/1‑101 (MQ=1)                                                                                                AGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCCGCGGCT          >  1:229451/1‑101 (MQ=1)                                                                                                AGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT          >  1:4414274/1‑101 (MQ=1)                                                                                                 gccCCCCCTCCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTA         <  1:3182265/98‑1 (MQ=11)                                                                                                 GCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTA         >  1:1503703/1‑101 (MQ=1)                                                                                                 GCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTA         <  1:4244539/101‑1 (MQ=1)                                                                                                  ccCCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAA        <  2:874383/99‑1 (MQ=11)                                                                                                  ccCCCCCCGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAA        <  1:4849956/99‑1 (MQ=11)                                                                                                  CGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGGGCAGCGGCTAA        >  1:144546/1‑101 (MQ=1)                                                                                                  CGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAA        >  2:3200955/1‑101 (MQ=1)                                                                                                   GCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAAT       >  1:1773274/1‑101 (MQ=1)                                                                                                   GCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAAT       >  1:5645589/1‑101 (MQ=1)                                                                                                    CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC      <  1:3194758/101‑1 (MQ=1)                                                                                                    CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC      <  1:3792845/101‑1 (MQ=1)                                                                                                    CCCCCTCCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC      <  2:3926988/101‑1 (MQ=1)                                                                                                    CCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC      <  1:3906061/101‑1 (MQ=1)                                                                                                    CCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC      <  1:1311560/101‑1 (MQ=1)                                                                                                                                                                                                              TCGCAAGGGCGTATTTGGACCAAGAAAAAGCGGGCGTGTTTTTTCTTGGTGAAAATACGCCGGGGGGAGACTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCC....................................................................................................  >  NC_014034/565233‑565336 ....................................................................................................CCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGAC  >  NC_014034/2600956‑2601055 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG