New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744807	47 (0.200)	26 (0.110)	15/164	27.8	0.36	intergenic (+192/+20)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	1699965 =	46 (0.160)					intergenic (+38/+5)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

CCGCGGGTCGCCTCGG.............................................................................................................  >  NC_014034/744792‑744807 ...................................CCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGC  >  NC_014034/1699965‑1700054                 ||||||||||||||||||                                                                                            ggcCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCC                          <  1:3906481/98‑1 (MQ=9)  gcCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCG                         >  1:1503352/3‑101 (MQ=9)   cCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGA                        >  1:4158472/2‑101 (MQ=2)   cCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGA                        >  1:2818575/2‑101 (MQ=2)    CGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAG                       <  2:3125218/101‑1 (MQ=0)    CGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAG                       >  2:3388180/1‑101 (MQ=0)    CGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAG                       >  2:5043845/1‑101 (MQ=0)    CGGGTAGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAG                       >  2:4595900/1‑101 (MQ=0)     GGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGA                      >  1:3760869/1‑101 (MQ=0)     GGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGA                      >  1:529404/1‑101 (MQ=0)      GGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAA                     >  1:4985811/1‑101 (MQ=0)        TCGCCTCGGCGTCATCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAAC                   >  1:1947326/1‑101 (MQ=0)        TCGCCTCGGCGTCAGCCGAGGCGAAATCCCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAAC                   <  1:746008/101‑1 (MQ=0)         CGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATAGGAGGGCTTCACCGGATAATCGCCCGAGAAACA                  >  1:4962728/1‑101 (MQ=0)          GCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAG                 >  1:4645439/1‑101 (MQ=0)          GCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAG                 >  2:122853/1‑101 (MQ=0)          GCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAG                 >  1:1421020/1‑101 (MQ=0)           CCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGG                >  1:3917846/1‑101 (MQ=0)            CTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGC               >  2:1546685/1‑101 (MQ=0)             TCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCG              >  1:1985234/1‑101 (MQ=0)              CGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGT             <  2:154815/101‑1 (MQ=0)              CGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGT             >  1:107351/1‑101 (MQ=0)               GGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTC            <  2:1985123/101‑1 (MQ=0)               GGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTC            >  2:3195118/1‑101 (MQ=0)               GGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTC            >  2:5263397/1‑101 (MQ=0)                GCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCG           <  1:249272/101‑1 (MQ=0)                        acgacgaAAAT.CCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTcg  >  2:1684625/8‑99 (MQ=0)                 ||||||||||||||||||                                                                                            CCGCGGGTCGCCTCGG.............................................................................................................  >  NC_014034/744792‑744807 ...................................CCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGC  >  NC_014034/1699965‑1700054 Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG