New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	900803 =	60 (0.210)	39 (0.140)	13/194	32.8	0.38	intergenic (‑132/‑155)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
	?	NC_014034	= 2995638	66 (0.230)					intergenic (+178/+42)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

TTGGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGG....................................................................................................  <  NC_014034/900904‑900803 ...................................................................................................GGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTGG  <  NC_014034/2995638‑2995539                                                                                                                                                                                                              GGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGG                                                                                                     <  2:4568703/101‑1 (MQ=1)        CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCC                                                                                                >  2:3498045/1‑101 (MQ=1)        CGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCC                                                                                                <  2:3430026/101‑1 (MQ=1)          ACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGGTCCGC                                                                                              >  2:4928947/1‑101 (MQ=1)          ACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGC                                                                                              <  2:2668413/101‑1 (MQ=1)           CTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCC                                                                                             <  1:4701949/101‑1 (MQ=1)           CTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCCCC                                                                                             >  1:1727087/1‑101 (MQ=1)           CTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGCGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCC                                                                                             <  2:5001338/101‑1 (MQ=1)            gCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCC                                                                                            <  2:1470324/100‑1 (MQ=1)            TCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGggcccccc                                                                                            >  1:2980593/1‑93 (MQ=0)            TCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCC                                                                                            <  2:3152631/101‑1 (MQ=1)             CTAGCCCACGTTGCTCCCTCTGACCAGAGCTTTGGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCC                                                                                           <  1:4993550/101‑1 (MQ=0)             CTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCC                                                                                           <  2:2527788/101‑1 (MQ=1)              TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCC                                                                                          <  2:3388890/101‑1 (MQ=1)              TAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCC                                                                                          >  1:5356380/1‑101 (MQ=1)               AGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCTGGCAGGGCCGGGGCGACCCGCGGGGGGCCCGCCCCCg                                                                                         >  2:2827418/1‑100 (MQ=0)               AGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCg                                                                                         <  2:1160163/101‑2 (MQ=11)                 CCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCCcc                                                                                       >  1:3814437/1‑99 (MQ=11)                     AGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCC                                                                                  <  1:5289898/101‑1 (MQ=34)                     AGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCC                                                                                  <  2:1132746/101‑1 (MQ=34)                     AGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCC                                                                                  <  1:2827579/101‑1 (MQ=34)                      GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                 <  1:549300/101‑1 (MQ=34)                      GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                 <  2:3004985/101‑1 (MQ=34)                      GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                 <  1:1760027/101‑1 (MQ=34)                      GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                 <  2:1949083/101‑1 (MQ=34)                      GTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                 <  2:519776/101‑1 (MQ=34)                       TTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCg                                                                                <  1:4464612/101‑2 (MQ=35)                       TTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCg                                                                                <  1:2056441/101‑2 (MQ=35)                       TTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCg                                                                                <  1:1072501/101‑2 (MQ=35)                        TGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCgg                                                                               <  1:5407368/101‑3 (MQ=37)                           CCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCG                                                                            <  2:534294/101‑1 (MQ=21)                              CTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCGCCCCCC.CACCCCCGGGCGTAT                                                                         >  2:749998/1‑101 (MQ=2)                              CTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTAT                                                                         <  2:1333455/101‑1 (MQ=9)                              CTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTAT                                                                         <  1:2423900/101‑1 (MQ=9)                              CTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTAT                                                                         <  1:1314039/101‑1 (MQ=9)                                CTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGTCCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATTT                                                                       <  1:770264/101‑1 (MQ=9)                                CTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATTT                                                                       <  2:1528748/101‑1 (MQ=9)                                 TGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATTTg                                                                      <  1:4120059/101‑2 (MQ=9)                                 TGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGGGGCTCCG.CCCCCGCACCCCCGGGCGTATTTg                                                                      <  1:226993/101‑2 (MQ=9)                                                                                                                                                                                                            TTGGCGCCGACTCTAGCCCAAGTTGCCCCCTCTGACCAGAGCTTTTGCCGGGCCGCGGCGCGCGGGGGCTTTCGCCCCGGCAGGGCCGGGGCGACCCGCGGG....................................................................................................  <  NC_014034/900904‑900803 ...................................................................................................GGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTGG  <  NC_014034/2995638‑2995539 Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG