New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2070653 =	57 (0.240)	105 (0.450)	22/160	22.9	0.79	intergenic (+68/+104)	dcd/guaB	deoxycytidine triphosphate deaminase/inosine‑5'‑monophosphate dehydrogenase
	?	NC_014034	= 2600949	0 (0.000)					intergenic (+11/‑130)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

TCGCCAAGCATTTCCGCGCGGGGTGAGGGGC.GCGCGGATGGATTTCGCCGCGGCTTTG.CCTGCGGCGACCCGCC.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGCGCCGC  >  NC_014034/2070560‑2070752                                                                                                 |                                                                                                    ccGCCAAGCTTGCCCGGGGGGGGGGGGGGGG.GCGCGGTTGGTTCCCGCCGCGTCTTGC.CCTGCGGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCg                                                                                               <  1:3987742/100‑1 (MQ=12) cagcaaaGCA.TTCCGGGGGGGGGGGGGGGCGGCGGGGGTGGTTGCCGCCGCGGTTTTC.CCGGCGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCg                                                                                               <  1:933697/96‑1 (MQ=2)    ccAAGCTTTCCGGGGGGGGGGGGGGGGG.GCGCGGGTGTTTTCCGCCGCGGCTTTG.CCTGGGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGa                                                                                            <  1:4179958/101‑1 (MQ=12)     caggcttgcccGCGGGGGGTGGGGGGC.GCGGGGATGTTTTGCGCCGCGCTTTTG.CCTGCGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGat                                                                                           <  2:4698091/92‑1 (MQ=16)      agccttccccGCGGGGGGGGGGGGGC.GCGCGGATGGTTTCCCCCGCGTCTTTG.CGTGGGCCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGata                                                                                          <  2:1506867/93‑1 (MQ=12)       aGCATTTCCGCGCGGGGTGAGGGGC.GCGCGGATGGATTTCGCCGCGGCTTTG.CCTGCGGCGACCCGCCGGGGGGGGCTGCCCCCCGGACCCCCCCGGatat                                                                                         >  2:3245883/1‑101 (MQ=39)               cgcgggGGGTGGGTGGC.GCGCGTTGGGTTTTCGCCGCGTCTTTG.CCTGCGGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCa                                                                                 <  2:4764472/101‑1 (MQ=21)                  ggggggTGGGGGGG.GCGGGGATGGTTGCCGCCGCGGCTTTC.CCGGGGGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGa                                                                              <  2:4756300/99‑1 (MQ=16)                  ggggggGGGGGGGC.GGGCGGTTGGGTCCCGCCGCTGCTTCC.CCTGCGGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGa                                                                              <  2:1114872/99‑1 (MQ=12)                     ggggggggggC.GGGGGGGTGGTTTCCCCCGCGGCTTGC.CCGGCGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGa                                                                           <  1:4627803/95‑1 (MQ=9)                         ggggggC.GGGGGGGTGGTTTCCCCCGCGGTTTTC.CCGGGGGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAggg                                                                       <  1:4200842/99‑1 (MQ=12)                         ggggggC.GCGGGGGTGGTTCCCCCCGCGCTTGTG.CCGGCGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAggg                                                                       <  2:3258629/99‑1 (MQ=9)                           ggggC.GCGCGGAGGAGTTACCCGGCGGCTTCG.CCGGCGGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGa                                                                     <  2:3836347/101‑1 (MQ=18)                                 gcgggGGTGGCTTCCCCCGCGGCTTGC.CCTGCGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCgg                                                                <  2:2621221/101‑1 (MQ=17)                                      gtgttttcccgccgcGCTTTCG.CGTGCGGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGttt                                                           <  2:4601915/92‑1 (MQ=18)                                       gtggttTCCGCCGCGGCTTTC.CCGGCGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTg                                                          <  2:5464058/100‑1 (MQ=18)                                          tttcccgccgcGGCTGCC.CCGGCGGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCg                                                       <  2:3950560/96‑1 (MQ=18)                                                 ccgcGGTTTCG.CCGGCGCCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTAcaca                                                <  1:1519404/101‑1 (MQ=21)                                                    ccgCTTTGCCCGGCGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGa                                              <  1:4574516/99‑1 (MQ=21)                                                       tgtcg.CCTGCGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGaaaaa                                          <  2:5145667/97‑1 (MQ=25)                                                         ccg.CCGGCGGCCCCCCGCCGGGGGGCGCTGCCCTCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAgg                                        <  1:4931681/99‑1 (MQ=25)                                                             ccgcgggccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGcc                                     <  1:3469474/91‑1 (MQ=25)                                                              gggcggccCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCg                                    <  1:5449030/99‑1 (MQ=25)                                                               ggcgcccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCgg                                   <  2:5221829/93‑1 (MQ=25)                                                                ggggccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCggg                                  <  1:5231944/94‑1 (MQ=25)                                                                gcgccgCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCggg                                  <  2:4326817/101‑1 (MQ=25)                                                                 ggcccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCgggg                                 <  1:1458026/95‑1 (MQ=25)                                                                 ggcccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCgggg                                 <  1:3246083/95‑1 (MQ=25)                                                                 cccccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCgggg                                 <  1:4173853/95‑1 (MQ=25)                                                                         cgccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTccccc                         <  1:1126476/96‑1 (MQ=255)                                                                         cgccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTccccc                         <  1:4112934/96‑1 (MQ=255)                                                                               ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCt                   <  2:4258348/101‑1 (MQ=255)                                                                               ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCt                   >  2:2718848/1‑101 (MQ=255)                                                                               ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCt                   <  1:1715921/101‑1 (MQ=255)                                                                                gggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCtt                  >  1:460675/1‑101 (MQ=255)                                                                                  gcgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTtgt                >  2:3387372/1‑101 (MQ=255)                                                                                   cgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTtgtg               >  1:1461485/1‑101 (MQ=255)                                                                                    gcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGa              >  2:3282881/1‑101 (MQ=255)                                                                                    gcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGa              <  1:3100776/101‑1 (MQ=255)                                                                                    gcTGCCCCCCGGACCCCCCGGAATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGa              >  1:4255546/1‑101 (MQ=255)                                                                                      tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt            >  1:163706/1‑101 (MQ=255)                                                                                      tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt            >  1:1721907/1‑101 (MQ=255)                                                                                      tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt            >  1:4190102/1‑101 (MQ=255)                                                                                      tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt            >  1:3811831/1‑101 (MQ=255)                                                                                        ccccccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTc          >  2:4337237/1‑101 (MQ=255)                                                                                        ccccccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGGTTCCCCCGGCCCTTGTGATTTc          >  1:5706918/1‑101 (MQ=255)                                                                                          ccccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAGGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTg        <  2:5782740/101‑1 (MQ=255)                                                                                          ccccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTg        >  2:4500547/1‑101 (MQ=255)                                                                                          ccccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTg        <  1:3869880/101‑1 (MQ=255)                                                                                            ccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcg      >  1:415430/1‑101 (MQ=255)                                                                                             cGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcgc     >  2:324292/1‑101 (MQ=255)                                                                                             cGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcgc     <  2:2348992/101‑1 (MQ=255)                                                                                             cGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcgc     >  2:1973627/1‑101 (MQ=255)                                                                                             cGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcgc     >  2:1403815/1‑101 (MQ=255)                                                                                             cGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcgc     >  1:5538839/1‑101 (MQ=255)                                                                                             cGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcgc     >  1:1863240/1‑101 (MQ=255)                                                                                              ggACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGcgcc    >  1:4314973/1‑101 (MQ=255)                                                                                              ggACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGcgcc    >  2:5098418/1‑101 (MQ=255)                                                                                              ggACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGcgcc    >  1:2565001/1‑101 (MQ=255)                                                                                               gACCCCCCGGGATATTTTCGGCAAGATGAAATGGGAGCGGGGTTTGCGGGTACACAGAGAAAGGGCGGGGGTGTCGCCCCGCCCTTGTGTTTTCTccgcac   >  2:358278/1‑99 (MQ=19)                                                                                                aCCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGcgccgc  >  2:5474629/1‑101 (MQ=255)                                                                                                aCCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGcgccgc  >  1:1012517/1‑101 (MQ=255)                                                                                                aCCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGagccgg  >  2:3608026/1‑100 (MQ=255)                                                                                                 |                                                                                                    TCGCCAAGCATTTCCGCGCGGGGTGAGGGGC.GCGCGGATGGATTTCGCCGCGGCTTTG.CCTGCGGCGACCCGCC.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGCGCCGC  >  NC_014034/2070560‑2070752 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG