New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1608051 =	0 (0.000)	75 (0.280)	29/184	22.4	1.00	intergenic (+321/‑26)	RCAP_rcc01484/murD	hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
	?	NC_014034	= 3053277	NA (NA)					intergenic (+133/‑102)	acsA3/RCAP_rcc02860	acetate‑‑CoA ligase/hypothetical protein
Rejected: Position hash score below cutoff.

CCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCTTGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGGCCGCGCGGCGCGGGCCCAATTCACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCG  >  NC_014034/1607948‑1608151                                                                                                        |                                                                                                     ccTTTTCCCAGCGGGTCCCGCGACGGGGTCCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCGCTTGGTCCGC.TGGCGC.GGCCCAATTCa                                                                                                      <  1:2817568/101‑1 (MQ=255)   ttttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcc                                                                                                    <  1:1371753/101‑1 (MQ=37)   ttttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcc                                                                                                    <  2:4991401/101‑1 (MQ=37)   ttttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcc                                                                                                    >  2:2186329/1‑101 (MQ=38)    tttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCCATTCAccc                                                                                                   >  1:5325808/1‑101 (MQ=37)    tttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccc                                                                                                   <  2:1007845/101‑1 (MQ=38)    tttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAacc                                                                                                   >  2:1792966/1‑101 (MQ=37)     ttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcccc                                                                                                  <  2:3591479/101‑1 (MQ=38)      tCCCAGCGGATCCCGCGACGGGGTGCGCCGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccccc                                                                                                 <  1:1677546/101‑1 (MQ=37)      tCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGGGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccccc                                                                                                 >  1:609280/1‑101 (MQ=37)      tCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccccc                                                                                                 <  1:5563054/101‑1 (MQ=37)      tCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccccc                                                                                                 <  1:2070352/101‑1 (MQ=38)         catcGGATCCCGCGACGGGTTGCGACGCC.TGCGGCGCCACCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcg                                                                                              <  2:1562088/98‑2 (MQ=25)         cAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcg                                                                                              <  2:2059388/101‑2 (MQ=38)         cAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcg                                                                                              >  2:2862582/1‑100 (MQ=38)         cAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcg                                                                                              >  2:3238442/1‑100 (MQ=38)         cAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcg                                                                                              >  2:4593316/1‑100 (MQ=38)            cGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcggga                                                                                           <  1:4433624/101‑5 (MQ=37)            cGGATCCCGCGACGGGGNGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcggga                                                                                           <  2:2251227/101‑5 (MQ=37)             ggATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGGTGCGCGCCCCCCCCTTGGGCCCCTC.GCGCGGG.CCAATTCAccccccccgggg                                                                                          >  1:2062712/1‑94 (MQ=255)             ggATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggat                                                                                          <  2:731698/101‑6 (MQ=37)             ggATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggat                                                                                          <  2:4658611/101‑6 (MQ=37)             ggATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCACCGcgggct                                                                                          >  1:2762902/1‑96 (MQ=37)             ggAGCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggat                                                                                          <  1:4448003/101‑6 (MQ=37)              gATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggata                                                                                         <  2:5424979/101‑7 (MQ=37)              gATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggata                                                                                         <  2:1391129/101‑7 (MQ=37)              gATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCACGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggata                                                                                         <  2:899680/101‑7 (MQ=25)               aTCCCGCGACGGGGTGCGACGCC.TGTGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatat                                                                                        <  2:5506932/101‑8 (MQ=25)                tCCCGCGACGGGGTGCGCCGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatatt                                                                                       <  1:2590803/101‑9 (MQ=25)                tCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatatt                                                                                       <  2:2670907/101‑9 (MQ=37)                  ccGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatatttc                                                                                     <  2:5472553/101‑11 (MQ=25)                                                                                              ggtgtgtgaaaCCCCCGCAGCTTACGGAGGGCGCATATGATCCCGGTTCAGGGATATGAGGGTGCTCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCt            <  1:1802227/91‑1 (MQ=255)                                                                                              ggggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCt            <  1:1875266/91‑1 (MQ=255)                                                                                              ggggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCt            >  2:2900629/11‑101 (MQ=255)                                                                                               gggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTg           >  1:1235000/10‑101 (MQ=255)                                                                                               gggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTg           >  2:4836237/10‑101 (MQ=255)                                                                                               gggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTg           >  1:2436783/10‑101 (MQ=255)                                                                                               gggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTg           >  2:1301428/10‑101 (MQ=255)                                                                                                ggtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGGGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTgg          >  2:1567367/9‑101 (MQ=255)                                                                                                 gtgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGc         <  2:3888603/94‑1 (MQ=255)                                                                                                  tgtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGcc        <  1:2270539/95‑1 (MQ=255)                                                                                                  tgggaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGcc        <  1:3400513/95‑1 (MQ=255)                                                                                                   gtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCa       >  2:3522452/6‑101 (MQ=255)                                                                                                   gtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCa       >  1:3162785/6‑101 (MQ=255)                                                                                                   gtgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCa       >  1:5083318/6‑101 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAc      >  2:2645752/5‑101 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAc      <  1:2635298/97‑1 (MQ=255)                                                                                                    tgaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTAGGGTCTGGCCAc      >  1:2565853/5‑101 (MQ=255)                                                                                                     gaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcg     <  2:2850434/98‑1 (MQ=255)                                                                                                     gaaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcg     <  2:1241461/98‑1 (MQ=255)                                                                                                      aaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcgg    <  2:5682155/99‑1 (MQ=255)                                                                                                      aaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcgg    >  2:921262/3‑101 (MQ=255)                                                                                                      aaaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcgg    <  2:4886052/99‑1 (MQ=255)                                                                                                       aaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCTCTCGGGTCTGGCCAcggc   >  1:3817128/2‑101 (MQ=255)                                                                                                       aaCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcggc   >  1:1216538/2‑101 (MQ=255)                                                                                                        aCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcggcg  >  2:3740734/1‑101 (MQ=255)                                                                                                        aCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAcggcg  <  2:1216455/101‑1 (MQ=255)                                                                                                        aCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCCCGGGGCTTGCGAcggcg  >  2:1325568/1‑101 (MQ=255)                                                                                                        |                                                                                                     CCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCTTGCGGCGCCGCCCGAAAGGGGGGCTGCGCGCCCCCCTCTTGGGCCGCGCGGCGCGGGCCCAATTCACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCG  >  NC_014034/1607948‑1608151 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG