New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1732870 =	36 (0.160)	43 (0.190)	19/154	23.8	0.49	intergenic (‑294/‑109)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
	?	NC_014034	= 2474937	52 (0.180)					intergenic (‑100/+26)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

GACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGCGGGGGGGCGCAGCCCC..CC.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAG  >  NC_014034/2474841‑2475037                                                                                                    |                                                                                                        gACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGCGc.cc                                                                                                   >  2:724407/1‑100 (MQ=255) gACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGCCGc.cc                                                                                                   >  1:4739182/1‑100 (MQ=255)      gAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGCGC.CCCCGGc                                                                                              >  1:4602472/1‑101 (MQ=37)             cgGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGTCGCTCTCGGGCTTGccc                                                                                        >  2:2562702/1‑101 (MQ=255)                 cccccccACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGCGC.CCCGGGCGTGcccccggc                                                                                   >  1:2227025/1‑96 (MQ=25)                   cccccACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGGGC.CTCGGGCCTGCCCGCGGCgc                                                                                 >  2:1642721/1‑100 (MQ=21)                   cccccACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGCCC.CCCGGGCCTGCCCGGggggg                                                                                 >  1:1567489/1‑98 (MQ=21)                           cGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGCGC.CCCCGGCGTGCCCGCGGCGAcctacacc                                                                         >  2:5403922/1‑94 (MQ=21)                            gAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGCGC.CCCCGGCCTGCCCGCGGCGGCATCAG.ccc                                                                       >  1:428127/1‑101 (MQ=21)                                 gCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGTGGG.CCCGGGGGTGCCCCAGGGGGCAACAG.CCCCTccg                                                                  >  1:2177770/1‑99 (MQ=18)                                   ccGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGTCGC.CCCGGGCCTGCCCCGGGGGGCATCAG.GCCCTC.gggt                                                               >  1:753478/1‑99 (MQ=18)                                   ccGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGCGC.CCCGGGCTTGCCCGGGGGGGCATCAG.CCCCTC.CGtt                                                               >  1:1296236/1‑101 (MQ=21)                                        ttttCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGTCGG.CTCCGGCTTGCCCGCGGCGGCGTCAG.GCCCTC.GGGTTCGAg                                                          >  1:4436688/1‑101 (MQ=18)                                        ttttCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGCCGC.CCCCGGGCTGCCCCAGGCGGCATCTG.CCCCCC.GGTTTctcg                                                          >  1:2477905/1‑98 (MQ=16)                                         tttCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGTCGC.CTCCGGCGTGCCCGCGACGGCCACAG.CCCCTC.TGTTTctggg                                                         >  1:4659490/1‑97 (MQ=17)                                          ttCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGCGC.CCCGGGGTTTCCCGGGGGGGGCTCAG.CCCTTT.GGGTTCggagg                                                        >  2:2657517/1‑97 (MQ=16)                                                  ccAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAA.CCCTTC.GGGTTCGAGGGCAGGCCCt                                                >  2:973182/1‑101 (MQ=255)                                                   cAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGGTTCGCGGGGAGGCCCtt                                               >  1:2585933/1‑101 (MQ=21)                                                    aaaTACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGCGC.CCCCGGGTTGCCCCGGGGGGCAACCGCCCCTTC.GGTTTGGGGGGGGGGCCCtt                                               >  1:3160931/1‑101 (MQ=9)                                                     aaTACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGTCGC.CTCGGGCCTGCCCGAGGCGACATCCG.CCCTTC.GGGTTCGAGGGCAGGGCCTTGt                                             >  2:3472537/1‑101 (MQ=18)                                                     aaTACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGCCC.CCCCGGGCTGCCCCACGCCAGCCCAG.CCCCTCGGGTTTCGCGGGC.GGCCCtatt                                             >  2:1294111/1‑98 (MQ=9)                                                      aTACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGTCGC.CTCGGGCTTGCCCCAGGCGCCATCAG.CCCCTC.GGGTTCGGGGGCCGGCCCTTGTc                                            >  1:1744740/1‑101 (MQ=18)                                                       tACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCC..CC.GCGGGGCGC.CCCGGGCTTGCCCGGGGGGGCATCAG.CCCTTC.CGGTTCTGGGGCAGGCCCCTGTcc                                           >  1:3330595/1‑101 (MQ=18)                                                         ggggggggggggggGGCGGGGGCGCGCCCCCCCCGCCGGCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGt                                             <  2:4687181/93‑1 (MQ=21)                                                               ggggggggGGGGGGCGGCCGCCTCCCC..CG.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTtgcgtg                                    <  2:2210198/99‑1 (MQ=37)                                                                       gtgcggggggCGCAGCCCC..CC.GCGGGTCGC.CCCGGGCTTGCCCGGGGGGACACCAG.CCCTTC.GGTTTTGAGGGCAGGCCCTTGTCCTTCCCTGCCGCgcgt                            >  2:395084/5‑101 (MQ=21)                                                                       gtgcggggggCGCAGCCCC..CC.GCGGGGCGC.CCCGGGCTTGCCCCCGGCGGCATCAG.CCCCTC.GGGTTTGAGGGCAGGGCCCTGTCCTTTCGTgcggggcgt                            >  2:3121455/5‑96 (MQ=255)                                                                        tgcggggggCGCAGCCCC..CC.GCGGGTCGC.CCCCGGCCTGGCCCCGGGGGCATCAG.CCCCTC.GGGTTCGGGGGGGCGGCCCTGTCCTTGCGCgcggcggggt                           >  2:4573802/4‑97 (MQ=9)                                                                         gcggggggCGCAGCCCC..CC.GCGGGTCGC.CTCGGGCTTGCCCGAGGGGGCATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGGGGGttt                          >  1:867327/3‑101 (MQ=25)                                                                          cggggggCGCAGCCCC..CC.GCGGGTCGG.CTCGGGGTTGCCCCAGGCGGCATCAG.CCCTTC.GGTTTTGAGGGCAGGCCCCTGTCCTTGCGTgcggcgcggttt                         >  2:3727087/2‑95 (MQ=255)                                                                          cggggggCGCAGCCCC..CC.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTgcggcggggttt                         >  2:5399207/2‑95 (MQ=255)                                                                           ggggggCGCCGCCCC..CC.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTttct                        <  1:4574078/101‑1 (MQ=255)                                                                           ggggggCGCAGCCCC..CC.GCGGGTCGC.CCCGGGGGTGCCCGGAGGGGGATACC.ACCTTC.CGCTTTGAGGGCAGGCCCTTGTCCTTGATCGCGGCGTGTttct                        >  2:2826874/1‑101 (MQ=12)                                                                           ggggggCGCAGCCCC..CC.GCGGGGCGC.CCCGGGGTTGCCCCGGGCGGCAACAG.CCCCTC.GGTTTTGAGGGCAGGGCCCTGTCCCTGCGGGGGGCGGGGttct                        >  1:5251719/1‑101 (MQ=255)                                                                           ggggggCGCAGCCCC..CC.GCGGGACGC.CTCGGGCTTGCCCCGGGGGCCATCCG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTACTTGCGTGCGGCGGGTttct                        >  2:1436985/1‑101 (MQ=25)                                                                           ggggggCGCAGCCCC..CC.CCGGGTCGC.CTCGGGCTTGCCCGGGGGGCCACAAC.CCCTTC.GGTTTCTCGGGCAGGCCCTTTTCGTTGCTGGCGGCGGGTttct                        >  2:2664650/1‑101 (MQ=16)                                                                            gggggCGCAGCCCC..CC.GCGGGTCGC.CTCGGGCTTGGCCGCGGCGACATCAA.CCCTTC.CGTTTTGACGGCAGGCCCCTTTCCCTTCGTGCGGGGGGGttctt                       >  2:4581532/1‑101 (MQ=16)                                                                            gggggCGCAGCCCC..CC.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTTGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGGGTttgtt                       >  2:2851267/1‑101 (MQ=255)                                                                            gggggCGCAGCCCC..CC.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGGGTttctt                       >  1:2624737/1‑101 (MQ=255)                                                                             gcgcccccccccc..cg.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTttcttc                      <  2:4592594/92‑1 (MQ=38)                                                                              gccgcccccccc..cg.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCg                     <  2:1759429/93‑1 (MQ=255)                                                                                   cAGCCCC..CC.GCGGGTCGC.CTCGGGCTTGCCCGCGGCGACATCAT.CCCTTC.GGGTTCCGGGGGAGGCGCCTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCg                >  1:1823204/1‑101 (MQ=25)                                                                                    cgccgtcggc.gcgGGGCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTc                 <  2:4391815/92‑1 (MQ=39)                                                                                    aGCCCC..CC.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCgc               >  2:4615388/1‑100 (MQ=255)                                                                                    aGCCCC..CC.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGa               >  2:867931/1‑101 (MQ=255)                                                                                      cccc..cc.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACg             >  2:3328398/1‑101 (MQ=255)                                                                                       ccc..cc.GCGGGGCGC.CTCGGGCTTTCCCGAGGCGGCATCAG.CCCTTC.GGGTTCGAGGGCAGGCCCTTGTCCCTGCGTGCGGCGGGGTTCTTCGCCTCGACGt            >  2:4528174/1‑101 (MQ=255)                                                                                             c.gcgGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCtt        <  1:1079914/101‑1 (MQ=255)                                                                                              ggtgggTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCtt        <  1:4495698/98‑1 (MQ=255)                                                                                              gccgGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCtt        <  2:1039912/99‑1 (MQ=255)                                                                                               gcgGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTc       <  2:3330390/101‑1 (MQ=255)                                                                                               gcgGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGGTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGGGGTTCTTCGCCTCGGCGTGCTTc       >  1:1940442/1‑101 (MQ=38)                                                                                                cgGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCg      >  1:4258576/1‑101 (MQ=255)                                                                                                cgGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCg      >  2:5598990/1‑101 (MQ=255)                                                                                                 gggTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGt     >  1:3943179/1‑101 (MQ=255)                                                                                                  ggTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTc    >  1:3560532/1‑101 (MQ=255)                                                                                                  ggTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTc    >  1:5296895/1‑101 (MQ=255)                                                                                                   gTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCa   <  2:3920870/101‑1 (MQ=255)                                                                                                    tCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAg  >  1:5474432/1‑101 (MQ=255)                                                                                                    |                                                                                                        GACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGCGGGGGGGCGCAGCCCC..CC.GCGGGTCGC.CTCGGGCTTGCCCGAGGCGACATCAG.CCCTTC.GGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAG  >  NC_014034/2474841‑2475037 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG