New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2578450 =219 (0.940)103 (0.440) 39/160 15.0 0.48 intergenic (+59/+111) purU/pgi formyltetrahydrofolate deformylase/glucose‑6‑phosphate isomerase
?NC_014034 = 2600949 0 (0.000)intergenic (+11/‑130) RCAP_rcc02424/surE short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

GCCGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGGCCCCTGCC  >  NC_014034/2600849‑2600959
                                                                                                    |          
gccgTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACgggggg            >  1:819342/1‑101 (MQ=255)
gccgTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACgggggg            >  1:5066020/1‑101 (MQ=255)
 ccgTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggc           >  2:2643373/1‑100 (MQ=255)
 ccgTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggc           >  1:538744/1‑100 (MQ=255)
 ccgTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggc           >  1:5340959/1‑100 (MQ=255)
  cgTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACgggggggg          >  1:4924032/1‑101 (MQ=255)
  cgTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggct          <  2:2263337/101‑3 (MQ=255)
  cgTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggct          >  2:689503/1‑99 (MQ=255)
  cgTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggct          >  2:963279/1‑99 (MQ=255)
  cgTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGAGCTGACGGACggggggcc          >  2:5196594/1‑99 (MQ=255)
   gTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggggg         >  1:3064664/1‑100 (MQ=255)
   gTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggctc         <  2:5560037/101‑4 (MQ=255)
   gTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggctc         >  2:4605287/1‑98 (MQ=255)
   gTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggctc         >  1:5614717/1‑98 (MQ=255)
   gTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggctc         <  2:310184/101‑4 (MQ=255)
   gTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggctc         <  1:2065409/101‑4 (MQ=255)
   gTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCCGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggctc         >  2:1968910/1‑98 (MQ=255)
     gCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggctctg       <  1:1495740/101‑6 (MQ=255)
      cGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACgggggggggcgc      >  1:2115819/1‑97 (MQ=255)
      cGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggctctgc      >  2:5687015/1‑95 (MQ=255)
       gggCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggctctgcc     >  2:2627653/1‑94 (MQ=255)
       gggCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggctctgcc     <  1:5581309/101‑8 (MQ=255)
       gggCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggcgggggg     >  1:4038704/1‑94 (MQ=255)
       gggCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGGctgcc     >  1:663031/1‑97 (MQ=255)
         gcgcgcTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACggggggctctgcccc   >  1:815240/1‑92 (MQ=255)
          cgcgcTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCNGAGATCTGACGGACggggggctctgccccc  >  1:2879767/1‑91 (MQ=255)
                                                                                                    |          
GCCGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGGCCCCTGCC  >  NC_014034/2600849‑2600959

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG