BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 408471	208 (0.800)	48 (0.190)	11/178	32.5	0.26	intergenic (+89/+59)	glnA1/dapA	glutamine synthetase/dihydrodipicolinate synthase
*	?	NC_014034	1640006 =	60 (0.210)	48 (0.190)	11/178	32.5	0.26	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
Rejected: Position hash score below cutoff.

Only 100 of 130 total aligned reads displayed.


ATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGG....G.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATC  >  NC_014034/1639906‑1640103


aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGAATTTGGGGGAAGAAGAAAACCATACCCTTTTTTT.TTTCCCCAAA.ATCCCGGGGGGG.CC..cggg....g                                                                                                               >  1:5418433/1‑101 (MQ=255)


aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..gggg....g                                                                                                               <  1:1652854/101‑1 (MQ=255)


aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..gggg....g                                                                                                               <  1:4642146/101‑1 (MQ=255)


 tCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..gggg....gg                                                                                                              <  1:501267/101‑2 (MQ=255)


    tCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..gggg....ggcag                                                                                                           <  2:4038622/101‑5 (MQ=255)


     ccGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTTGGGGAAGATGAAAACCAT.CCCTTTCATC.TTTCCCCCAATATCCCCGGGGGC.CC..cggg....ggcagc                                                                                                          >  1:4502833/1‑96 (MQ=25)


     ccGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..gggg....ggcagc                                                                                                          <  1:4349760/101‑6 (MQ=255)


      cGGATGTGAGTTACGCTGCGTCCGGCGGGGATATTTGGGGCAAGATGAACCCCAA.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..gggg....ggcagcg                                                                                                         <  2:5784217/101‑7 (MQ=21)


      cGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..gggg....ggcagcg                                                                                                         <  2:5599403/101‑7 (MQ=255)


      cGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..gggg....ggcagcg                                                                                                         <  2:4139822/101‑7 (MQ=255)


       ggATGTGACTTTCGATGCCTCCGGCGGGGGTATTTTGGGCAAGAAGAAACCCAT.CCCTTTCATT.TTTCCCCCAATATCCCTGGGGGC.CC..cggg....gggagcgc                                                                                                        >  2:4383686/1‑94 (MQ=25)


        gATGTGACTTTCGATGCCTCCGGCGGGGGGATTTTGGGGGAGAAGAAACCCAT.CCCCTTCATCTTTCCCCCAAAAACCCCCGGGGGC.CC..gggg....ggggcggc                                                                                                        >  2:5085780/1‑94 (MQ=255)


        gATGTGACTTTCGATGCCTCCGGCGGGGGAATTTTGGGGAAAATGAAACCCAT.CCCTTTTCTC.TTGCCCCACAAAATCCAGGGGGC.CC..gggg....gggagcgcc                                                                                                       >  1:5743179/1‑93 (MQ=255)


        gATGTGACTTTCGATGCCTCCGGCGGGGATATTTTGGGGAAGATGAAAACCAT.CCCTTTCATC.TTTCCCCAAAAATCCCCGGGGGC.CC..GGGG....g.....g.g.....cgcgcc                                                                                            >  1:3848056/1‑96 (MQ=25)


        gATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..gggg....ggcagcgcc                                                                                                       <  1:284227/101‑9 (MQ=255)


         aTGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGGAAGATGAAACCCCT.TCCTTTCTTC.TTGCCCCAAATATTCCGGGGGGCGCC..gggg....ggcgcgccc                                                                                                       >  2:624386/1‑93 (MQ=21)


         aTGTGACTTTCGATGCCTCCGGCGGAGGTATTTTGGGCAAAATGAAAACCCA.CCCTTTTATT.TTGTCCCCAACATTCCCTGGGGC.CC..gggg....ggaggcgcgc                                                                                                      >  2:2500935/1‑92 (MQ=12)


          tgtgACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCACGGGGGGC.CC..gggg....ggcagcggccc                                                                                                     >  2:770959/1‑91 (MQ=25)


                   cGATGCCTCCGGCGGGGGTATTTGGGGGAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGGAG.....C.G.....C.CCCCCGCCACtt                                                                                    >  2:256745/1‑101 (MQ=21)


                       gCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCCCTTCCGc                                                                                >  2:4822275/1‑101 (MQ=21)


                         cTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCCCTTCCGccc                                                                              >  2:4231720/1‑100 (MQ=21)


                             gggggggATTTTTGGGCAAAAATAAACCCCAC.CCTTTTCATC.TTCCCCCAAATACCCGGGGGGGC.CG..GGGGGGCAG.....C.C.....C.CCCCCGCCACTTCCGCCACggg                                                                          <  2:1306333/98‑1 (MQ=255)


                              gcggGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACgggg                                                                         >  2:3071109/1‑101 (MQ=25)


                              gcggGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACgggg                                                                         >  2:1862240/1‑101 (MQ=25)


                                ggggATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCa                                                                       >  2:876144/1‑101 (MQ=21)


                                ggggATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCa                                                                       >  1:1229041/1‑101 (MQ=21)


                                 gggATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAg                                                                      >  1:4381489/1‑101 (MQ=25)


                                    atatTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAgcgc                                                                   >  1:992936/1‑101 (MQ=21)


                                    atatTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAgcgc                                                                   >  2:2453052/1‑101 (MQ=25)


                                    atatTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAgcgc                                                                   >  1:4160906/1‑101 (MQ=25)


                                    atatTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAgcgc                                                                   >  1:2358908/1‑101 (MQ=25)


                                    atatTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAgcgc                                                                   >  1:3222641/1‑101 (MQ=25)


                                      atTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGccc                                                                 >  2:3049378/1‑101 (MQ=25)


                                      atTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGccc                                                                 >  1:4120154/1‑101 (MQ=25)


                                       tttGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGcccc                                                                >  1:3172914/1‑101 (MQ=21)


                                       tttGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCAAGGGGCAGCGcccc                                                                >  2:5385928/1‑101 (MQ=21)


                                       ttgggggCAAGATGAACCCCAC.CCTTTTCTTC.TTCCCCAAAATACCCGGGGGGGC.CG..GGGG....GGC...C.GCC...C.CCCCCGCCACTTCCGCCACGGGGCAGCGcccc                                                                <  2:2709564/98‑1 (MQ=255)


                                        tgggggCAAAAAAAACCCCCC.CCCTTTTCTT.TGGCCCCAAAATCCCCGGGGGGC.CC..GGGG....GGGCACC.C.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGcccc                                                                <  1:671015/99‑1 (MQ=255)


                                          ggggCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGc                                                             >  2:4392576/1‑101 (MQ=25)


                                          ggggCAAAAACAAACCCNC.CCCTTTCATT.CTCCCCCAAATTGCCCGGGGGGC.CC..GGGG....GGGCCCC.C.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg                                                              <  2:591026/101‑1 (MQ=255)


                                           gggCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGcc                                                            >  1:2686668/1‑101 (MQ=25)


                                           gggAAAGAAAAACCCCAC.CCCTTCCATC.TT.CCCCAAAATCCCCGGGGGGC.CC..GGGG....GGCC..C.GCC...C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGcc                                                            <  2:3677750/101‑1 (MQ=12)


                                              cAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt                                                         >  2:2030727/1‑101 (MQ=25)


                                               aaGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg                                                        >  1:4588419/1‑101 (MQ=25)


                                                aGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa                                                       >  1:2992479/1‑101 (MQ=25)


                                                aGATCAACCCCAT.CCTTTTCTTC.TGCCCCAAAATACCCGGGGGGGG.CC..GGGG....GGC...C.GCC...C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa                                                       <  2:795172/101‑1 (MQ=255)


                                                 gATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGAc                                                      >  2:4460526/1‑101 (MQ=25)


                                                  aTGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACg                                                     >  1:3575967/1‑101 (MQ=25)


                                                  aTGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACg                                                     >  1:2051482/1‑101 (MQ=25)


                                                    gAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa                                                   >  2:2616297/1‑101 (MQ=25)


                                                     aaaCCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg                                                  >  2:3278213/1‑101 (MQ=25)


                                                     aaaCCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg                                                  >  1:4368430/1‑101 (MQ=25)


                                                      aaCCCCC.CCCTTTCCTT.CTGCCCCAAATTACCGGGGGGGG.CCGGGGGG....G.....C.GGCC..C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg                                                  <  2:3567942/101‑1 (MQ=255)


                                                      aaCCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg                                                 >  1:2162992/1‑101 (MQ=25)


                                                      aaCCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg                                                 >  2:3766623/1‑101 (MQ=25)


                                                        cccAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCCG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGGAGCGCCCCGGCCGTTGACGAAggtc                                               >  1:4736193/1‑99 (MQ=21)


                                                        cccAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgag                                               >  2:98616/1‑101 (MQ=25)


                                                        cccAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgag                                               >  2:1524005/1‑101 (MQ=25)


                                                          cAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGCGAc                                             >  2:5327193/1‑101 (MQ=21)


                                                          cAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAc                                             >  1:622937/1‑101 (MQ=25)


                                                          cAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAc                                             >  1:1944186/1‑101 (MQ=25)


                                                               ccTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGGGACcgcg                                         >  2:4136842/1‑101 (MQ=21)


                                                               ccTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcgcg                                         >  1:2828137/1‑101 (MQ=25)


                                                               ccTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcgcg                                         >  2:852854/1‑101 (MQ=25)


                                                                  ttCTTC.TTGCCCCAAATACCCGGGGGGGCGGG..GGGG....G.....CGG.....CGCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt                                     <  2:1478627/101‑1 (MQ=255)


                                                                  ttCGTC.CTGCCCCAAATCCCCGGGGGGGC.GC..GGGG....G.....G.GCCCCCC.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAt                                       <  2:259130/101‑1 (MQ=255)


                                                                  ttCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg                                      >  2:1762605/1‑101 (MQ=25)


                                                                  ttCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg                                      >  2:4813007/1‑101 (MQ=25)


                                                                  ttCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCCCCACGGGGCAGCGCCCCGGCCCGTTACGCAGGAGACCGCGGTg                                      >  2:1018362/1‑101 (MQ=17)


                                                                    cATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATggt                                    >  1:2577321/1‑99 (MQ=25)


                                                                    cATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt                                    >  1:2800620/1‑101 (MQ=25)


                                                                     aTC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGttt                                   >  2:902808/1‑101 (MQ=25)


                                                                     aTC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGttt                                   >  2:3862500/1‑101 (MQ=25)


                                                                       c.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa                                 >  1:1453035/1‑101 (MQ=25)


                                                                       c.TTGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa                                 >  2:2435837/1‑101 (MQ=25)


                                                                          tGCCCCAAATTCCCGGGGGGGG.CC..GGGG....GGC...C.GCCC..C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaa                                <  2:4529799/101‑1 (MQ=255)


                                                                          tGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCTGGCCGTTGACGAAGGAGACCGCGATGTTTCaaa                               >  1:5005550/1‑101 (MQ=25)


                                                                          tGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaa                               >  1:5701210/1‑101 (MQ=25)


                                                                          tGCCCCAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaa                               >  1:3550492/1‑101 (MQ=25)


                                                                            ccccAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAg                             >  2:5668158/1‑101 (MQ=25)


                                                                             cccAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGa                            >  1:4020112/1‑101 (MQ=25)


                                                                             cccAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGa                            >  2:214927/1‑101 (MQ=25)


                                                                              ccAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGAt                           >  1:5338137/1‑101 (MQ=25)


                                                                               caaaatccccGGGGGGC.CCGGGGGG....G.....C.GCCC..C.CCCCCGCCACGTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGAt                           <  1:1691568/94‑1 (MQ=255)


                                                                               cAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATc                          >  2:4042248/1‑101 (MQ=25)


                                                                               cAAATATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATc                          >  1:3837554/1‑101 (MQ=25)


                                                                                aaaTATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATcc                         >  1:3357683/1‑101 (MQ=25)


                                                                                 aaTATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCt                        >  2:1656747/1‑101 (MQ=25)


                                                                                 aaTATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCt                        >  1:2638362/1‑101 (MQ=25)


                                                                                 aaTATCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCt                        >  2:2324395/1‑101 (MQ=25)


                                                                                    atCCCGGGGGGC.CC..GGGGGGGAG.....C.G.....C.CCCCCCCCCCCTTCGCCACCGGGGAGCGCCCCGGCCCGTGACGAAGGAGGACGCGATGTTTCAAAAAATACTGAt                     >  2:4856727/1‑101 (MQ=12)


                                                                                    atCCCGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAt                     >  2:4378264/1‑101 (MQ=37)


                                                                                      cccGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCg                   >  1:5287381/1‑101 (MQ=37)


                                                                                      cccGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCg                   >  2:1735904/1‑101 (MQ=37)


                                                                                       ccGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGc                  >  1:3363425/1‑101 (MQ=37)


                                                                                       ccGGGGGGC.CC..GGGGGGCAG.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGc                  >  2:3645167/1‑101 (MQ=37)


                                                                                                     ggggggcag.....c.g.....c.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGCCGAAGGGGACCGCGATGGTTCAAAAGATCCTGATCGCCAACAGGGCCg       >  1:4463989/9‑101 (MQ=255)


                                                                                                      gggggcag.....c.g.....c.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCga      >  2:2178613/8‑101 (MQ=255)


                                                                                                         ggcag.....c.g.....c.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGAt   >  1:3642195/5‑101 (MQ=255)


                                                                                                          gcag.....c.g.....c.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATc  >  2:4617250/4‑101 (MQ=255)


ATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCAT.CCCTTTCATC.TTGCCCCAAATATCCCGGGGGGC.CC..GGGG....G.....C.G.....C.CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATC  >  NC_014034/1639906‑1640103

Base quality scores:


ATCG

< 3 ≤


ATCG

< 17 ≤


ATCG

< 26 ≤


ATCG

< 33 ≤


ATCG

< 40 ≤


ATCG