New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 799078176 (0.690)51 (0.200) 16/174 28.4 0.27 intergenic (+109/‑19) sucB/lpdA1 dihydrolipoyllysine‑residue succinyltransferase/dihydrolipoyl dehydrogenase
?NC_014034 1640019 = 95 (0.330)intergenic (+99/‑46) mccB/mccA methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
Rejected: Position hash score below cutoff.

Only 100 of 144 total aligned reads displayed.

CGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGG....G.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGATCG  >  NC_014034/1639925‑1640119
                                                                                                               |                                                                                                    
cGATGCCTCCGGCGGGGGTATTTGGGGGAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGGAG.....CG.....CCCCCCG.CCACtt                                                                                                    >  2:256745/1‑101 (MQ=21)
    gCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCCCTTCCGc                                                                                                >  2:4822275/1‑101 (MQ=21)
      cTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCCCTTCCGccc                                                                                              >  2:4231720/1‑100 (MQ=21)
           gcggGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACgggg                                                                                         >  2:3071109/1‑101 (MQ=25)
           gcggGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACgggg                                                                                         >  2:1862240/1‑101 (MQ=25)
             ggggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCa                                                                                       >  1:1229041/1‑101 (MQ=21)
              gggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAg                                                                                      >  1:4381489/1‑101 (MQ=25)
               ggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAgc                                                                                     >  1:467681/1‑101 (MQ=25)
                 atatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCaagat                                                                                   >  2:560875/1‑97 (MQ=21)
                 atatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAgcgc                                                                                   >  1:3222641/1‑101 (MQ=25)
                 atatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAgcgc                                                                                   >  1:2358908/1‑101 (MQ=25)
                   atTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGccc                                                                                 >  2:3049378/1‑101 (MQ=25)
                   atTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGccc                                                                                 >  2:4068800/1‑101 (MQ=25)
                   atTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGccc                                                                                 >  1:4120154/1‑101 (MQ=25)
                    tttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCAAGGGGCAGCGcccc                                                                                >  2:5385928/1‑101 (MQ=21)
                    ttgggggCAAGATGAACCCCACCCTTTTCTTCTTCCCCAAAATACCCGGGGGGGCCG..GGGG....GGC...CGCC...CCCCCCG.CCACTTCCGCCACGGGGCAGCGcccc                                                                                <  2:2709564/98‑1 (MQ=255)
                    ttgggggAAAGAAAAACCCCACCCCTTTCTTCTT.CCCCAAAATCCCCGGGGGGCCCGGGGGG....G.....CGGCC..CCCCCCG.CCACTTCCGCCACGGGGCAGCGcccc                                                                                <  2:2420155/98‑1 (MQ=9)
                     tgggggCAAAAAAAACCCCCCCCCTTTTCTTTGGCCCCAAAATCCCCGGGGGGCCC..GGGG....GGGCACCC.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGcccc                                                                                <  1:671015/99‑1 (MQ=255)
                       ggggCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGc                                                                             >  2:4392576/1‑101 (MQ=25)
                        gggCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGcc                                                                            >  1:2686668/1‑101 (MQ=25)
                        gggCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGcc                                                                            >  2:5175968/1‑101 (MQ=25)
                        gggAAAGAAAAACCCCACCCCTTCCATCTT.CCCCAAAATCCCCGGGGGGCCC..GGGG....GGCC..CGCC...CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGcc                                                                            <  2:3677750/101‑1 (MQ=12)
                            aaGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg                                                                        >  2:3495513/1‑101 (MQ=25)
                            aaGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg                                                                        >  1:4588419/1‑101 (MQ=25)
                             aGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa                                                                       >  1:2992479/1‑101 (MQ=25)
                              gATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGAc                                                                      >  2:4460526/1‑101 (MQ=25)
                               aTGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACg                                                                     >  1:3575967/1‑101 (MQ=25)
                               aTGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACg                                                                     >  1:2051482/1‑101 (MQ=25)
                                  aaaCCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg                                                                  >  1:4368430/1‑101 (MQ=25)
                                   aaCCCCCCCCTTTCCTTCTGCCCCAAATTACCGGGGGGGGCCGGGGGG....G.....CGGCC..CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg                                                                  <  2:3567942/101‑1 (MQ=255)
                                   aaCCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg                                                                 >  2:3766623/1‑101 (MQ=25)
                                   aaCCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg                                                                 >  1:2162992/1‑101 (MQ=25)
                                     cccATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCCG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGGAGCGCCCCGGCCGTTGACGAAggtc                                                               >  1:4736193/1‑99 (MQ=21)
                                     cccATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgag                                                               >  2:1524005/1‑101 (MQ=25)
                                     cccATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgag                                                               >  2:98616/1‑101 (MQ=25)
                                       cATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGCGAc                                                             >  2:5327193/1‑101 (MQ=21)
                                       cATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAc                                                             >  2:630612/1‑101 (MQ=21)
                                           ccTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGGGACcgcg                                                         >  2:4136842/1‑101 (MQ=21)
                                           ccTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcgcg                                                         >  2:852854/1‑101 (MQ=25)
                                           ccTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcgcg                                                         >  1:2828137/1‑101 (MQ=25)
                                            cTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGa                                                        >  2:1332332/1‑101 (MQ=25)
                                              ttCGTCCTGCCCCAAATCCCCGGGGGGGCGC..GGGG....G.....GGCCCCCCCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAt                                                       <  2:259130/101‑1 (MQ=255)
                                              ttCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg                                                      >  2:1762605/1‑101 (MQ=25)
                                              ttCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg                                                      >  2:4813007/1‑101 (MQ=25)
                                              ttCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCCCCACGGGGCAGCGCCCCGGCCCGTTACGCAGGAGACCGCGGTg                                                      >  2:1018362/1‑101 (MQ=17)
                                                cATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATggt                                                    >  1:2577321/1‑99 (MQ=25)
                                                cATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt                                                    >  1:2800620/1‑101 (MQ=25)
                                                cATCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt                                                    >  1:2655277/1‑101 (MQ=25)
                                                 aTCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGttt                                                   >  2:3862500/1‑101 (MQ=25)
                                                 aTCTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGttt                                                   >  2:902808/1‑101 (MQ=25)
                                                   cTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa                                                 >  1:1453035/1‑101 (MQ=25)
                                                   cTTGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa                                                 >  2:2435837/1‑101 (MQ=25)
                                                     tGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCTGGCCGTTGACGAAGGAGACCGCGATGTTTCaaa                                               >  1:5005550/1‑101 (MQ=25)
                                                     tGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaa                                               >  1:5701210/1‑101 (MQ=25)
                                                     tGCCCCAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaa                                               >  1:3550492/1‑101 (MQ=25)
                                                       ccccAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAg                                             >  2:5668158/1‑101 (MQ=25)
                                                        cccAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGa                                            >  2:862239/1‑101 (MQ=25)
                                                        cccAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGa                                            >  2:214927/1‑101 (MQ=25)
                                                          cAAATATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATc                                          >  1:3837554/1‑101 (MQ=25)
                                                           aaaTATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATcc                                         >  1:3357683/1‑101 (MQ=25)
                                                            aaTATCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCt                                        >  2:1656747/1‑101 (MQ=25)
                                                               atCCCGGGGGGCCC..GGGGGGGAG.....CG.....CCCCCCC.CCCCCTTCGCCACCGGGGAGCGCCCCGGCCCGTGACGAAGGAGGACGCGATGTTTCAAAAAATACTGAt                                     >  2:4856727/1‑101 (MQ=12)
                                                               atCCCGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAt                                     >  2:4378264/1‑101 (MQ=37)
                                                                 cccGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCg                                   >  1:5287381/1‑101 (MQ=37)
                                                                 cccGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCg                                   >  2:1735904/1‑101 (MQ=37)
                                                                  ccGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGc                                  >  1:3363425/1‑101 (MQ=37)
                                                                  ccGGGGGGCCC..GGGGGGCAG.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGc                                  >  2:3645167/1‑101 (MQ=37)
                                                                              cggggggcag.....cg.....cCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGcc                        >  2:2076472/10‑101 (MQ=255)
                                                                                gggggcag.....cg.....cCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCga                      >  2:2178613/8‑101 (MQ=255)
                                                                                   ggcag.....cg.....cCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGAt                   >  1:3642195/5‑101 (MQ=255)
                                                                                    gcag.....cg.....cCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATc                  >  2:4617250/4‑101 (MQ=255)
                                                                                          gggcgcgcccccccccG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCga                      <  2:269227/91‑1 (MQ=255)
                                                                                          ccgcccccccccccccC.CCCCCCCCGCCGCGGGCCCCCCCCCCGGCGGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCga                      <  1:5158711/91‑1 (MQ=255)
                                                                                            ggccccccccccccG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCgaga                    <  2:2738069/93‑1 (MQ=255)
                                                                                             gccccccccccccG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGAt                   <  1:1883963/94‑1 (MQ=255)
                                                                                               cccccccccccGCCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATc                  <  2:1995895/96‑1 (MQ=255)
                                                                                                  ccccccccG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCt              <  2:5700915/99‑1 (MQ=255)
                                                                                                  ccccccccG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCt              <  2:1177230/99‑1 (MQ=255)
                                                                                                  ccccccccG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCt              <  1:5754153/99‑1 (MQ=255)
                                                                                                  ccccccccG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCt              <  2:4502561/99‑1 (MQ=255)
                                                                                                   cccccccG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTg             <  1:750364/100‑1 (MQ=255)
                                                                                                     cccccG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTc           >  1:1832979/1‑101 (MQ=255)
                                                                                                     cccccG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTc           >  2:4564120/1‑101 (MQ=255)
                                                                                                     cccccC.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTc           <  1:3548741/101‑1 (MQ=255)
                                                                                                      ccccG.CCTCTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCg          <  1:2501077/101‑1 (MQ=255)
                                                                                                      ccccG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCg          >  1:5013949/1‑101 (MQ=255)
                                                                                                         cG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGt       <  1:5697287/101‑1 (MQ=255)
                                                                                                         cG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGt       >  1:1009288/1‑101 (MQ=255)
                                                                                                          g.CCACTTCCGCCAAGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTg      <  1:5386218/101‑1 (MQ=255)
                                                                                                          ccccACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGt       <  2:1404981/99‑1 (MQ=255)
                                                                                                            ccACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGa     >  1:4149429/1‑101 (MQ=255)
                                                                                                             cACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGTGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGAt    >  2:4997762/1‑101 (MQ=255)
                                                                                                             cACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGAt    >  1:5355602/1‑101 (MQ=255)
                                                                                                             cACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGAt    >  2:645956/1‑101 (MQ=255)
                                                                                                             cACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGAt    <  1:3099560/101‑1 (MQ=255)
                                                                                                              ccTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGATc   <  1:2340167/100‑1 (MQ=255)
                                                                                                              aCTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGATc   >  2:1618614/1‑101 (MQ=255)
                                                                                                              aCTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGATc   <  1:3282725/101‑1 (MQ=255)
                                                                                                               cTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGATCg  <  1:2399879/101‑1 (MQ=255)
                                                                                                               cTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGATCg  <  1:3071283/101‑1 (MQ=255)
                                                                                                               |                                                                                                    
CGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCC..GGGG....G.....CG.....CCCCCCG.CCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGATCG  >  NC_014034/1639925‑1640119

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG