BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	1,396,816	A→T	10.1%	H233L (CAT→CTG)	RCAP_rcc01307 →	hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	1,396,816	0	A→T	10.1%	84.5 ‑1.0 ‑0.0	317	H233L (CAT→CTT)	RCAP_rcc01307	hypothetical protein
Reads supporting (aligned to +/- strand): new base (19/13): ref base (142/142): total (161/156)
Fisher's exact test strand distribution p-value = 3.54e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.94e-01

Only 100 of 329 total aligned reads displayed.


CCGCGGGGGCGTGGATCGAAACCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGC  >  NC_014034/1396716‑1396916


    gggggCGTGGATCGAAACCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCa                                                                                                   >  2:625419/1‑101 (MQ=255)


    gggggCGTGGATCGAAACCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCa                                                                                                   <  1:3365317/101‑1 (MQ=255)


    gggggCGTGGATCGAAACCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCa                                                                                                   <  2:1237863/101‑1 (MQ=255)


       ggCGTGGATCGAAACCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAgc.g                                                                                               <  2:1783416/101‑1 (MQ=255)


           tGGATCGAAACCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCggc                                                                                           >  1:5268747/1‑100 (MQ=255)


           tGGATCGAAACCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGa                                                                                           >  1:1325163/1‑101 (MQ=255)


           tGGATCGAAACCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGa                                                                                           >  2:1816470/1‑101 (MQ=255)


            ggATCGAAACCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGAc                                                                                          <  1:2854788/101‑1 (MQ=255)


            ggATCGAAACCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGAc                                                                                          <  1:256339/101‑1 (MQ=255)


             gATCGAAACCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACg                                                                                         <  2:2016710/101‑1 (MQ=255)


                 gAAACCCTTTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCtt                                                                                     <  1:2343207/101‑1 (MQ=255)


                  aaaCCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTg                                                                                    <  2:4857807/101‑1 (MQ=255)


                     cccTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGt                                                                                 <  1:391340/101‑1 (MQ=255)


                      ccTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTggggc                                                                                >  1:854839/1‑99 (MQ=255)


                      ccTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGTTc                                                                                <  1:3299158/101‑1 (MQ=255)


                      ccTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTc                                                                                <  2:3118728/101‑1 (MQ=255)


                      ccTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTc                                                                                <  1:4600122/101‑1 (MQ=255)


                       cTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCg                                                                               <  2:5004320/101‑1 (MQ=255)


                       cTGCCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCg                                                                               <  2:2459027/101‑1 (MQ=255)


                        tGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGTAT...GATCATGCGGC.GCGGGCGGCTTGGGCCGc                                                                              >  1:3943994/1‑101 (MQ=37)


                         gTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGTTCGCt                                                                             <  2:4473483/101‑1 (MQ=255)


                         gTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCt                                                                             >  1:1721609/1‑101 (MQ=255)


                          tCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTc                                                                            >  2:470164/1‑101 (MQ=255)


                          tCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTc                                                                            >  1:5325777/1‑101 (MQ=255)


                           cccTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GTGGACGGCTTGGGTCGCTcc                                                                           <  1:5779951/101‑1 (MQ=255)


                           cccTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTcc                                                                           >  2:1955114/1‑101 (MQ=255)


                             cttatatGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCTAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTcccc                                                                         <  2:4266134/98‑1 (MQ=255)


                              tCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTccccc                                                                        <  2:3360357/101‑1 (MQ=255)


                               cATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTcccccc                                                                       >  1:3178757/1‑101 (MQ=255)


                               cATATGCTGCCACGATGCCCTTGAGTCGCCCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTcccccc                                                                       <  1:2711061/101‑1 (MQ=255)


                               cATATGCTGCCACGANGCCCTTGAGTCGCTCCCCCCGCGGGGGNGTGGATCGAA..ACC.GTGTGGAT...GATNANGCNGC.GCTGANGNNTNGNNNCNCTcccccc                                                                       >  1:1905882/1‑101 (MQ=37)


                                atatGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCcg                                                                      <  1:5528952/101‑1 (MQ=255)


                                atatGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCcg                                                                      <  1:4875994/101‑1 (MQ=255)


                                  atGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCcgcg                                                                    >  2:1680143/1‑101 (MQ=255)


                                    gcggcCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCggg                                                                  <  1:1460759/98‑1 (MQ=255)


                                     ctgcCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCgggg                                                                 <  2:2350913/101‑1 (MQ=255)


                                     ctgcCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCgggg                                                                 >  1:4121894/1‑101 (MQ=255)


                                      tgcCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCggggg                                                                >  1:2901882/1‑101 (MQ=255)


                                            gATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGa                                                          <  2:1000055/101‑1 (MQ=255)


                                             aTGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGAt                                                         >  2:868734/1‑101 (MQ=255)


                                             aTGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGAt                                                         >  2:1592739/1‑101 (MQ=255)


                                              tGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATc                                                        <  2:297145/101‑1 (MQ=255)


                                               gCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                       <  2:1465221/101‑1 (MQ=255)


                                                 atcgccgTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                       <  1:779563/95‑1 (MQ=2)


                                                  cgtGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                    <  1:2133276/99‑1 (MQ=255)


                                                  cTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GCGTGGAT...GCTCATGCAGC.GCGGACGGCTTGGGGCGCTCCCCCCCCGGGGGCGGGGGTCGaaa                                                    >  2:4950204/1‑101 (MQ=37)


                                                   ttGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGGGGGGGTCGAAAc                                                   >  1:4424251/1‑101 (MQ=255)


                                                   ttGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                   <  1:1166941/101‑1 (MQ=255)


                                                    gccgTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                    >  2:2810042/4‑101 (MQ=2)


                                                    gccgTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                    >  2:5403304/4‑101 (MQ=2)


                                                      cgTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAca                                                  >  1:1051622/2‑100 (MQ=2)


                                                      cgTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAca                                                  >  2:4371810/2‑100 (MQ=2)


                                                      aGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCgg                                                <  1:2283183/101‑1 (MQ=255)


                                                       gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAA...AAAAAGGCAGCAGCAG.CGGCTGCGGTCGCTCCCCCCGAGGGGGGGTGGATCGaaaaa                                                  >  2:4077315/1‑99 (MQ=0)


                                                       gTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcat                                                 >  1:1579054/1‑99 (MQ=2)


                                                       gTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGt                                               <  1:495895/101‑1 (MQ=255)


                                                        tCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcatg                                                <  2:2085173/101‑4 (MQ=2)


                                                         cGCTCCCCCCGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcatgg                                               >  2:384415/1‑97 (MQ=2)


                                                         cGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTcc                                             <  2:5706047/101‑1 (MQ=255)


                                                          gCTCCCCCCGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcatggc                                              >  2:1182742/1‑96 (MQ=2)


                                                          gCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCa                                            <  2:5270861/101‑1 (MQ=255)


                                                          gCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCa                                            >  1:5159672/1‑101 (MQ=255)


                                                            tctccccGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCaga                                          <  2:5319968/98‑1 (MQ=255)


                                                            tCCCCCCGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcatggcta                                            >  1:3800141/1‑94 (MQ=2)


                                                            tCCCCCCGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcatggcta                                            >  2:1428075/1‑94 (MQ=2)


                                                            tCCCCCCGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcatggcta                                            <  1:4300806/101‑8 (MQ=2)


                                                             ccccccGCGGGGGCGTGGATCGAA..ACG.GCGTAGATCTCGGTCTGGGTGC.GCTCGCGG.TTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcatggctat                                           <  2:3585728/101‑9 (MQ=2)


                                                              cccccGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAgaga                                        <  1:3102609/101‑1 (MQ=255)


                                                               tcccGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGAt                                       <  2:717364/100‑1 (MQ=255)


                                                               ccccGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGAt                                       <  2:3375977/101‑1 (MQ=255)


                                                                cccGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATa                                      <  2:3473145/101‑1 (MQ=255)


                                                                 ccGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAg                                     <  2:5484620/101‑1 (MQ=255)


                                                                  cgcgGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGa                                    >  2:5601051/1‑101 (MQ=255)


                                                                   gcgGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGAc                                   >  1:4255901/1‑101 (MQ=255)


                                                                    cgGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGAcc                                  >  1:2011197/1‑101 (MQ=255)


                                                                    cgGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGAcc                                  <  1:2464297/101‑1 (MQ=255)


                                                                     gggggCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACcg                                 >  2:2703386/1‑101 (MQ=255)


                                                                     gggggCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAAC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCagatcggaagag                                 >  1:3645188/1‑92 (MQ=37)


                                                                      ggggCGTGGATCGAA..ACC.CGGTGGAT...GATTATGCAGC.GCGGGCGGCTTGGGTCGCTCCCCCCCCCGGGGGGGGGATCGAAAACCGGCCCGAGATAGAAcgc                                >  2:5760603/1‑101 (MQ=255)


                                                                       gggCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACcgcg                               >  1:2824998/1‑101 (MQ=255)


                                                                         gCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACcgcgcg                             >  1:1248913/1‑101 (MQ=255)


                                                                           gTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGa                           >  1:5608522/1‑101 (MQ=255)


                                                                            tGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCCGAGATAGACCGCGCGGAc                          >  2:2316601/1‑101 (MQ=255)


                                                                             ggATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGACGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGAcc                         >  1:5738388/1‑101 (MQ=255)


                                                                              gATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGAcct                        >  2:1369601/1‑101 (MQ=255)


                                                                               aTCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGAcctc                       <  1:2656599/101‑1 (MQ=255)


                                                                                tCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGAcctcc                      <  1:3465768/101‑1 (MQ=255)


                                                                                   aa..aCC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCa                   <  1:4722569/101‑1 (MQ=255)


                                                                                    a..aCC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAg                  >  1:5410728/1‑101 (MQ=255)


                                                                                    a..aCC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAg                  >  1:3755478/1‑101 (MQ=255)


                                                                                       aCC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGa                 >  1:3041901/1‑101 (MQ=255)


                                                                                        cc.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGAc                >  2:2911327/1‑101 (MQ=255)


                                                                                         c.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACg               <  1:1816929/101‑1 (MQ=255)


                                                                                           gtgtGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGt              <  2:3940715/101‑1 (MQ=255)


                                                                                            tgtgGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTc             >  1:2212476/1‑101 (MQ=255)


                                                                                             gtgGAT...CATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCg            <  1:954534/101‑1 (MQ=255)


                                                                                                  t...gatCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTccc       >  1:714434/1‑101 (MQ=255)


                                                                                                        tCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTcccccc    <  2:3087637/101‑1 (MQ=255)


                                                                                                        tCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTcccccc    <  1:5211218/101‑1 (MQ=255)


                                                                                                        tCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTcccccc    <  2:3269775/101‑1 (MQ=255)


CCGCGGGGGCGTGGATCGAAACCCTGTCCCTCATATGCTGCCACGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA..ACC.GTGTGGAT...GATCATGCAGC.GCGGACGGCTTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGC  >  NC_014034/1396716‑1396916

Base quality scores:


ATCG

< 3 ≤


ATCG

< 20 ≤


ATCG

< 27 ≤


ATCG

< 33 ≤


ATCG

< 41 ≤


ATCG