| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,699,950 | C→A | 19.5% | intergenic (+23/+20) | RCAP_rcc01568 → / ← purF | RES domain family protein/amidophosphoribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,699,950 | 0 | C→A | 19.5% | 19.7 ‑0.8 ‑0.7 | 41 | intergenic (+23/+20) | RCAP_rcc01568/purF | RES domain family protein/amidophosphoribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (5/3): ref base (15/18): total (20/21) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.54e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.02e-01 | ||||||||||
TGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGC > NC_014034/1699851‑1700046
|
tGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.Tgc.g < 1:1014237/101‑1 (MQ=255)
tGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.Tgc.g < 1:5476970/101‑1 (MQ=255)
ggTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.Tgc.gc < 1:3110039/101‑1 (MQ=255)
gTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.Gcc < 1:2277342/101‑1 (MQ=255)
gTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.Gcc > 1:4714908/1‑101 (MQ=255)
tGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCg > 2:2297486/1‑101 (MQ=255)
tGCTGTTTCGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCg < 1:1166513/101‑1 (MQ=255)
ggCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCg < 1:247631/100‑1 (MQ=255)
gCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGa > 2:939068/1‑101 (MQ=255)
gCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGa < 2:733549/101‑1 (MQ=255)
gCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGa > 1:733617/1‑101 (MQ=255)
gCTGTTTCGCTGGAGGGACCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGa < 2:2730547/101‑1 (MQ=255)
cTGTTTCGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAg < 1:1456328/101‑1 (MQ=255)
cTGTTTCGCGGGAGGGACCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAg < 2:5129541/101‑1 (MQ=255)
tGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAgg > 2:3262592/1‑101 (MQ=255)
gTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGCCCGGACATCGACAGCCTGCGGATTTCGGTTGCGGGCAGAGTTTC.GCCTCGGC.TGC.GCCGAgga > 2:869832/1‑100 (MQ=255)
gTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGc < 1:725148/101‑1 (MQ=255)
tttCGCTGGGGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCg < 2:2499335/101‑1 (MQ=255)
tttCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCg < 1:1861199/101‑1 (MQ=255)
tttCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCg > 1:3656739/1‑101 (MQ=255)
tttCGCGGGGGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCg < 1:3168377/101‑1 (MQ=255)
tcgggggagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGac < 2:1926820/96‑2 (MQ=255)
tCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCCAGGCGac > 2:2068950/1‑100 (MQ=255)
cGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGacc > 2:749953/1‑99 (MQ=255)
gggggagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGaccc < 1:672034/98‑4 (MQ=255)
gcgggagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGaccc < 2:1108272/98‑4 (MQ=255)
gCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGaccc > 1:235163/1‑98 (MQ=255)
gCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGaccc > 2:2367339/1‑98 (MQ=255)
cTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGacccg > 2:487565/1‑97 (MQ=255)
agggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGGCCTCGCC.GCC.GCCGAggggccccgccc > 1:4011638/1‑91 (MQ=255)
agggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGAAATAcccc < 1:687105/101‑1 (MQ=255)
gggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGacccgcccgg > 2:275994/1‑92 (MQ=255)
gggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGAAATAccccc > 2:399637/1‑101 (MQ=255)
aTCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCa < 1:399681/101‑1 (MQ=255)
gcgcAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGG.TGC.GCCGAGGCGAAAAACCCCCCCCCCCCTTCATCttta > 2:3961700/1‑99 (MQ=255)
gcAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAg > 1:2128785/1‑101 (MQ=255)
cTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCt < 1:2287970/101‑1 (MQ=255)
tGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCtt < 2:2128668/101‑1 (MQ=255)
aGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGa > 2:342918/1‑101 (MQ=255)
ccccgccgggtC.GCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCg > 1:3755147/11‑101 (MQ=25)
ggccgggtC.GCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGccc < 1:3906481/94‑1 (MQ=37)
ccgggtC.GCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCga > 1:4158472/6‑101 (MQ=37)
cgggtC.GCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCgag < 2:3125218/97‑1 (MQ=37)
cgggtC.GCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCgag > 2:5043845/5‑101 (MQ=37)
cgggtC.GCCTCGGC.GTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCgag > 2:3388180/5‑101 (MQ=37)
ggtC.GCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGaa > 1:4985811/3‑101 (MQ=38)
tC.GCCTCGGCGTCA.GCCGAGGCGAAATCCCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAAc < 1:746008/101‑1 (MQ=255)
c.GCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATAGGAGGGCTTCACCGGATAATCGCCCGAGAAACa > 1:4962728/1‑101 (MQ=38)
ggC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCg > 2:5421828/1‑101 (MQ=255)
gC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGc > 2:1626663/1‑101 (MQ=255)
|
TGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTC.GCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGC > NC_014034/1699851‑1700046
Base quality scores:
ATCG
< 3 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|