| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,732,860 | G→C | 14.8% | intergenic (‑284/‑119) | RCAP_rcc01601 ← / → tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,732,860 | 0 | G→C | 14.8% | 3.5 ‑2.4 0.0 | 47 | intergenic (‑284/‑119) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (0/8): ref base (12/27): total (12/35) | ||||||||||
| Fisher's exact test strand distribution p-value = 9.32e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
CCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCC...C.C....GT...C...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCG > NC_014034/1732761‑1732949
|
ccccccTGCAGCCGCATGCCGTCCGCGTCAACCGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGAGGc > 1:2718732/1‑101 (MQ=255)
ccccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGccc > 1:1361725/1‑101 (MQ=255)
ccccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAGccc > 2:508623/1‑101 (MQ=255)
cccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGcccc < 1:2040799/101‑1 (MQ=255)
cccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGcccc < 1:4138062/101‑1 (MQ=255)
ccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAGgccc...c > 1:1349763/1‑101 (MQ=255)
ccTGCAGCCGCATCCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGcccc...c < 1:4972910/101‑1 (MQ=255)
cTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGcccc...c.c < 2:3586581/101‑1 (MQ=255)
cTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAGcgcc...c.c > 1:689170/1‑101 (MQ=255)
ggCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCC...C.C....g < 1:2636303/100‑1 (MQ=255)
cAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCC...C.C....gcg < 2:2782920/101‑3 (MQ=255)
cAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGGGcccc...c.cccg > 2:3538509/1‑98 (MQ=255)
aGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAGgccc...c.cccgg > 2:4642426/1‑97 (MQ=255)
aGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAGcccc...c.cccgg > 1:5503465/1‑97 (MQ=255)
gCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAGgccc...c.ccccgg > 1:5588846/1‑96 (MQ=255)
gCATGCCGTCCGCGTCAACGGGCAAGGCCCCCTCTTTTCCTAGGCAAAATACCCCCTTTTTTCTTTGCGGGGGGGCGGGGGGTGAAGCCCC...C.C....gcgggtcg < 1:1370606/101‑8 (MQ=25)
gCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAGgccc...c.cccggggcg > 1:3769685/1‑93 (MQ=255)
cATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGTGGGGGGTGAAGCCCC...C.C....gcggggcgc > 1:4863383/1‑93 (MQ=255)
aaCAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGa < 1:3845554/101‑1 (MQ=21)
aGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGc < 2:991574/101‑1 (MQ=21)
ccggtttttCCTAGGAAAAATACGCCTTTCTTTCTTTTCGGGGGGGCGGGGGGTGAACCCCC...C.C....GC...GGGTCG....CCTCGGGCTTGCCCGAGGCGAAAGCTTcc < 2:70871/96‑1 (MQ=17)
ccGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCC...C.C....GCGGGT...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTccc < 1:3610843/101‑1 (MQ=21)
cTTTTCCTAGGCAAAATCCGCCCTTCTTTCTTTGCGGGGGGGCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTcccccc < 2:3336542/101‑1 (MQ=18)
cTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTcccccc < 2:5781576/101‑1 (MQ=21)
tcccTGGGCAAAATCCGCCCTTCTTTCTTTGCGGGGGGGCGGGGGGTGAACCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTg < 2:3229874/99‑1 (MQ=17)
ccgaGGAAAAATTCGCCCTTTTTGCTTTGGGGGGGGGCGGGGGGGCAACCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGaa < 1:599072/98‑1 (MQ=2)
ccaaGGAAAAATCCGCCTTTTTTTCTTTTGGGGGGGGCGGGGGGGAAACCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGaa < 2:335494/98‑1 (MQ=9)
cTAGGCAAAATCCCCCCTTTTTTCTTTGGGGGGGGGCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGaaa < 1:2496240/101‑1 (MQ=14)
agtcAAAATCCTCCTTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAAc < 2:2537918/98‑1 (MQ=17)
gCAAAGTACCCCCTTTTTTTTTTTCGGGGGGGGGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCt < 2:5385751/101‑1 (MQ=17)
gCAAAATACGCCCTTCTTTCTTGTCGGGGGGGCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCt < 2:1652602/101‑1 (MQ=18)
taaaaTCCGCCCTCGTTTCTTTTGGGGGGGGCGGGAGGTGAAGCCCCTGGC.G....GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCtt < 2:2685915/100‑1 (MQ=12)
cAAAATCCCCCTTTTTTTTTTTGGGGGGGGGGGGGGGGTGACCCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCtt < 1:2407497/101‑1 (MQ=2)
cAAAATCCCCCTTTCTTTTTTTGGGGGGGGGGGGGGGGTGAACCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCtt < 2:5068540/101‑1 (MQ=9)
aaaattccGCCCTTCTTTCTTTGGGGGGGGGCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCtt < 2:1954077/94‑1 (MQ=14)
aaaaactcccccTTTTTTTTTTGGGGGGGGGGGGGGGGGGAACCCCC...C.CCGCGGG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCt < 2:3011927/92‑1 (MQ=2)
aaTACGCCCTTCTTTCTTTTGGGGGGGGCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGcc < 2:1669152/101‑1 (MQ=18)
aTACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCt < 2:868409/101‑1 (MQ=21)
cGCTCTTCTTTCTTTGCGGGGGGGCGGGGGGGGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcg < 2:805220/101‑1 (MQ=17)
ccTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcgcgc < 2:5079872/101‑1 (MQ=21)
tttctttTCGGGGGGGCGGGGGGGGGAGCCCC...C.CCCG.GG...G...GG....CCCCCGGCGTGCCCCAGGCGGAAACGTCCCCCCCCGGAAACCCTGCCCCCGCGCGCCGc > 2:4423967/1‑101 (MQ=255)
tttttGGGGGGGGGGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCttt < 2:5312555/100‑1 (MQ=18)
ttttCGGGGGGGGGGGGGGTGAAACCCC...C.CCGCGGG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCttt < 2:1349675/101‑1 (MQ=21)
ttttCGGGGGGGCGGGGGGGGAAGCCCC...C.C....CC...C...GGGGGCCCCCGGGCTTGCCCCGGGGGAAAGCTTCCCCCCCGGAAACCCTGCCCGCcgcgcgcgccttc > 2:2409782/1‑94 (MQ=255)
tttgggggggggGGGGGGGTGACCCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTc < 1:4642702/96‑1 (MQ=18)
ggggggggCGGGGGGTGACCCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCtt < 2:1427717/100‑1 (MQ=18)
gggggggGGGGGGGGGAACCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCttt < 2:5614901/101‑1 (MQ=18)
ggggggCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTc < 1:3473759/101‑1 (MQ=21)
ggggggCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTc < 2:3769442/101‑1 (MQ=21)
ggggggCGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTc < 2:5463259/101‑1 (MQ=21)
gggggGGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCg < 2:4416929/101‑1 (MQ=21)
ggggCGGGGGGGGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCgg < 1:3502339/101‑1 (MQ=21)
ggCGGGGGGTCAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGcc < 2:2413746/101‑1 (MQ=21)
cGGGGGGTGAAGCCCG...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTTCCTGCGCGCGTCGCTTTCCCTTTTGGCCCg > 1:4881740/1‑101 (MQ=18)
cGGGGGGTGAAGCCCCT..CGC....GTG..T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCg < 1:3548126/101‑1 (MQ=25)
cGGGGGGTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCg > 2:2458531/1‑101 (MQ=21)
ggggggTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGGCTCGCTTTCCCTTTCGGCCCgg > 2:296370/1‑101 (MQ=18)
ggggggTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGccccg > 1:964044/1‑99 (MQ=21)
ggggggTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCgg > 2:3760503/1‑101 (MQ=21)
ggggggTGAAGCCCC...C.CGCG.GG...T...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCgg > 2:3026747/1‑101 (MQ=21)
gggggTGAAGCCCC...C.CGCG.GG...G...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGCCGCTTTCCCTTTCTGCCCGgc > 2:2652351/1‑101 (MQ=21)
ggggTGAAGCCCC...C.C....GCGGGG...CG....CCTCGGGCTTGCCCGAGGCGTAAGCTTCCCCCCGTGGAAACCTTGCCTGCGCGCGTCGCTTTCCCTTGCGGCCCGgcg > 2:1681885/1‑101 (MQ=21)
|
CCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAGCCCC...C.C....GT...C...CG....CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCG > NC_014034/1732761‑1732949
Base quality scores:
ATCG
< 3 ≤
ATCG
< 8 ≤
ATCG
< 20 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|