Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_014034 2,330,178 G→C 100% intergenic (+153/+159) RCAP_rcc02161 → / ← mrcA hypothetical protein/penicillin‑binding protein 1A

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0140342,330,1780G→C100.0% 100.7 44intergenic (+153/+159)RCAP_rcc02161/mrcAhypothetical protein/penicillin‑binding protein 1A
Reads supporting (aligned to +/- strand):  new base (5/38):  ref base (1/0):  total (6/38)

CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......CG...G.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCG  >  NC_014034/2330078‑2330245
                                                                                                                  |                                                                          
cTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...g                                                                            <  2:2024341/101‑1 (MQ=255)
cTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...g                                                                            <  1:663828/101‑1 (MQ=255)
cTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...g                                                                            <  2:2732250/101‑1 (MQ=255)
cTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...g                                                                            <  2:370273/101‑1 (MQ=255)
cTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...g                                                                            >  2:3763056/1‑101 (MQ=255)
cTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...g                                                                            <  2:4064781/101‑1 (MQ=255)
  tGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggg                                                                          >  2:5355440/1‑99 (MQ=255)
  tGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggg                                                                          >  2:4174598/1‑99 (MQ=255)
  tGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggc                                                                          <  2:907303/101‑3 (MQ=255)
  tGGCCCCCGCCAAGGGGGGCAACGGCGCGGCGAGCGCCGGACCGATCGGCCGGAGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggc                                                                          <  2:3252467/101‑3 (MQ=25)
    gCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGCCCCGGGC....G.......Cg...ggggg                                                                        >  2:1355881/1‑97 (MQ=255)
    gCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggctc                                                                        <  1:2245179/101‑5 (MQ=255)
     ccTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...gggtcc                                                                       >  1:4259347/1‑96 (MQ=255)
     ccTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggctcc                                                                       <  2:1775048/101‑6 (MQ=255)
     ccTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggctcc                                                                       <  2:2358092/101‑6 (MQ=255)
     ccTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCCGCGACCCGGGC....G.......Cg...ggcgcc                                                                       >  1:4816027/1‑96 (MQ=255)
       tCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCGGGGC....G.......Gg...ggggccgc                                                                     >  2:876673/1‑94 (MQ=255)
       tCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggctccgc                                                                     <  2:1816885/101‑8 (MQ=255)
        ccGCCAAGGGCGGCAACGGCGCGCAGAGCTCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGCCCCGGGC....G.......Gg...ggatccgcc                                                                    <  2:5706272/101‑9 (MQ=255)
        ccGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...gggcccgcc                                                                    >  2:3696381/1‑93 (MQ=255)
        ccGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggctccgcc                                                                    <  1:3957935/101‑9 (MQ=255)
        ccGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggctccgcc                                                                    <  1:592700/101‑9 (MQ=255)
        ccGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggctccgcc                                                                    <  2:2465154/101‑9 (MQ=255)
        ccGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggctccgcc                                                                    <  1:1662889/101‑9 (MQ=255)
         cGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggctccgccc                                                                   <  2:3195529/101‑10 (MQ=38)
          gCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......Gg...ggctccgcccc                                                                  <  2:4259087/101‑11 (MQ=37)
                ggcggcAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......GG...G.......GCGCCCCccccccccc                                                     >  2:4398889/1‑97 (MQ=37)
                              gcAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTgc                                              <  1:3431087/101‑1 (MQ=18)
                                   gcgcCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCaa                                         <  1:325766/101‑1 (MQ=18)
                                    cgccgcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAg                                        >  1:1540157/1‑101 (MQ=18)
                                    cgccgcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAg                                        <  1:3748960/101‑1 (MQ=18)
                                     gccgcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCCCCCCCGGCGCATTTGCGCCAAGa                                       >  2:3681189/1‑101 (MQ=16)
                                      ccgcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaa                                      <  1:4810460/101‑1 (MQ=18)
                                      ccgcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaa                                      <  2:2087225/101‑1 (MQ=18)
                                       cgcACGGATCGGCCGATGGCTGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaaa                                     <  2:2288969/101‑1 (MQ=17)
                                       cgcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaaa                                     <  1:1355969/101‑1 (MQ=18)
                                        gcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaaaa                                    <  2:2915047/101‑1 (MQ=18)
                                        gcACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaaaa                                    <  2:1597412/101‑1 (MQ=18)
                                         cACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaaaaa                                   <  2:155248/101‑1 (MQ=17)
                                         cACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGaaaaa                                   <  1:5524385/101‑1 (MQ=17)
                                            ggATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......GG...GGCTCCCCCCCCGCACCCCCGGCGTATTTTCGCCACGAAAAAAcc                                >  2:2703774/1‑101 (MQ=16)
                                             gATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCg                               <  2:2268564/101‑1 (MQ=18)
                                             gATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCg                               <  2:2923180/101‑1 (MQ=18)
                                             gATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCCCCG...C.......CCCCGCACCCCCCGCGTACTTTCGCCAAGAAAAAACCg                               >  2:2592446/1‑101 (MQ=16)
                                              aTCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCgg                              <  2:1453645/101‑1 (MQ=18)
                                               tCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCggg                             <  1:1468629/101‑1 (MQ=18)
                                               tCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCggg                             <  1:3521070/101‑1 (MQ=18)
                                               tCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCggg                             <  1:542692/101‑1 (MQ=18)
                                               tCGGCAGAGGGGGGAAAGGATTTGCGCCGCGCAGGCGCGGCGCCCCGGGCTGGGG.......CGCCCC.......CCCCGCCCCCCCGGCTTATTTGCCCCAAGAAAAAGCCggg                             <  2:3297111/101‑1 (MQ=255)
                                                 ggCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGgc                           <  2:4312940/101‑1 (MQ=17)
                                                 ggCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCCCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGgc                           >  2:1389521/1‑101 (MQ=17)
                                                  gCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGgcg                          <  2:4646881/101‑1 (MQ=17)
                                                    cGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGgcgcg                        <  1:5385709/101‑1 (MQ=17)
                                                    cGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGgcgcg                        <  1:3851443/101‑1 (MQ=17)
                                                       tGGCGGAGAGGAATTTCGCCGCGCAGGCGCCGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCAt                     <  1:2191189/101‑1 (MQ=17)
                                                        ggCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATg                    <  1:3336555/101‑1 (MQ=17)
                                                        ggCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATg                    <  2:3104092/101‑1 (MQ=17)
                                                        ggCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATg                    <  1:843808/101‑1 (MQ=17)
                                                          cGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCg                  <  1:443443/101‑1 (MQ=18)
                                                              gagGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGc              <  1:4475972/101‑1 (MQ=18)
                                                                ggAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGccc            <  1:2775699/101‑1 (MQ=17)
                                                                 gAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGcccc           <  1:4174848/101‑1 (MQ=17)
                                                                 gAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGcccc           <  1:2428997/101‑1 (MQ=17)
                                                                   aTTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCgg         <  2:1137243/101‑1 (MQ=17)
                                                                   aTTTCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCgg         >  2:194945/1‑101 (MQ=17)
                                                                     tgcgccgcGCGGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGAt       <  1:5348728/99‑1 (MQ=12)
                                                                      tCGCCGCGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATc      <  2:4035527/101‑1 (MQ=18)
                                                                        gccgcGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCAc    <  2:236734/101‑1 (MQ=18)
                                                                        gccgcGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCAc    <  2:1619744/101‑1 (MQ=18)
                                                                         ccgcGCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCAcc   <  1:4913597/101‑1 (MQ=18)
                                                                          cgcgCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACcg  >  2:4571424/1‑101 (MQ=18)
                                                                          cgcgCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACcg  <  1:3696609/101‑1 (MQ=18)
                                                                          cgcgCAGGCGCGGCGACCCGGGC....GGGGGCTCCG...C.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACcg  <  1:1041180/101‑1 (MQ=18)
                                                                                                                  |                                                                          
CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGC....G.......CG...G.......CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCG  >  NC_014034/2330078‑2330245

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG