| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,016 | C→G | 7.9% | intergenic (+64/‑178) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,016 | 0 | C→G | 7.9% | 27.5 ‑2.4 ‑0.0 | 177 | intergenic (+64/‑178) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (9/5): ref base (65/97): total (75/102) | ||||||||||
| Fisher's exact test strand distribution p-value = 9.48e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.35e-01 | ||||||||||
Only 100 of 193 total aligned reads displayed.
CGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGT.AA.GGGGGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.CC.C.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC > NC_014034/2493917‑2494115
|
cgccgcGGCGGGCGCGCGGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAAcc < 1:553261/101‑1 (MQ=21)
gccgcGGCGGGCGCGCGGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCg > 2:5668893/1‑101 (MQ=21)
ccgcGGCGGGCGCGCGGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCgg > 1:5308800/1‑101 (MQ=21)
gcggcgGGCGCGCGGCACGCCAGGCCGAGTCAG.GGGGGGGCGCGGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.At < 1:369795/101‑1 (MQ=18)
gggggggcgCCGGGCCCGACAGGCCGAGT.AA.GGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGc < 1:2269614/97‑1 (MQ=18)
cggcggGCGCGCGGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATg < 2:3747437/101‑1 (MQ=21)
cgggcgCGCGGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCt > 1:3114725/1‑101 (MQ=21)
gggcgCGCGGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCtt < 1:3340066/101‑1 (MQ=21)
gggcgCGCGGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCtt < 1:195317/101‑1 (MQ=21)
gggcgCGCGGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCtt > 2:2446846/1‑101 (MQ=21)
gggcgCGCGGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACCCCCCCCCGGACATTTGCAGCCAGATGAAAACGG.AGGccgt > 1:5716720/1‑99 (MQ=18)
gggggggggCCCGCCAGGCCGAGT.AAGGGGGGGGCGCTCCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCttt < 1:3210721/94‑1 (MQ=17)
ggcgCGCGGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCttt < 1:404052/101‑1 (MQ=21)
cgcgcgGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCa > 1:1526278/1‑101 (MQ=21)
gcgcgGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCAt < 1:5128591/101‑1 (MQ=21)
gcgcgGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCAt < 2:5376790/101‑1 (MQ=21)
gcgGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCt < 2:3431272/101‑1 (MQ=21)
cgGCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCtt < 2:4126816/101‑1 (MQ=21)
ggCACGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTg > 2:2517607/1‑101 (MQ=21)
aCGACAGGCCGAGT.AAGGGGGGGGCTCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGccc < 2:2269814/101‑1 (MQ=18)
aCGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGccc < 2:4743496/101‑1 (MQ=21)
aCGACAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGGCCGCCAGCGGACTCCCCCCCGGATATTTGCCGCAAGAAGAAAACGGAAGGCCTTTCTTCtgccc > 1:1041465/1‑97 (MQ=9)
cAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGaaa > 2:1955983/1‑101 (MQ=21)
cAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGaaa < 1:2331066/101‑1 (MQ=21)
cAGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGaaa < 2:3984427/101‑1 (MQ=21)
aGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAat > 1:270633/1‑101 (MQ=21)
aGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAat < 2:4629544/101‑1 (MQ=21)
aGGCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAat > 2:3411163/1‑101 (MQ=21)
ggCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAata > 1:4318997/1‑101 (MQ=21)
gCCGAGT.AAGGGGGGGGCGTTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAatat < 2:438697/101‑1 (MQ=18)
gCCGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAatat < 1:3597734/101‑1 (MQ=21)
gccgggtagggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAatat < 1:290385/91‑1 (MQ=18)
ccGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATc > 2:5270971/1‑101 (MQ=18)
ccGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATc < 2:1002550/101‑1 (MQ=18)
cGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATcc < 1:1768512/101‑1 (MQ=21)
cGAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATcc > 1:1610409/1‑101 (MQ=18)
gAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATccc > 2:5357442/1‑101 (MQ=18)
gAGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATccc > 1:1109696/1‑101 (MQ=18)
aGT.AAGGGGGGGGCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCg > 1:1711471/1‑101 (MQ=18)
ggaagggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCg < 2:3377528/95‑1 (MQ=18)
gtaaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCgg > 2:5087086/6‑101 (MQ=255)
gtaaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCgg < 2:4477155/96‑1 (MQ=255)
gtaaggggggggCGCGGCCCACCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCgg < 2:1457348/96‑1 (MQ=18)
aaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCgggg > 2:190980/4‑101 (MQ=255)
aggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCggggg > 2:3237842/3‑101 (MQ=255)
gggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGt < 2:4936145/101‑1 (MQ=255)
ggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTg < 1:5728365/101‑1 (MQ=255)
ggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGaa < 1:4076109/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t < 1:679154/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t < 1:1688307/101‑1 (MQ=255)
gcgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.Tgg > 1:1959831/1‑101 (MQ=255)
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g > 2:3684816/1‑101 (MQ=255)
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g < 2:5573735/101‑1 (MQ=255)
cTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTTCCGCAAGATGAAACCGG.ATGCCTTTCATCTGGCCCGAAATATCCCGGGGGGTGAA.TGGcaa > 2:1679067/1‑99 (MQ=21)
cTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.a < 1:536070/101‑1 (MQ=255)
tGCCCCCCGTCCGCAAGCGGGCTCCCCCCGGGATATTTGCAGCAAGATGCAACCGG.GTGCCTTTCCTCTTTTCCCAAATAACCCGGGGGGGGacaggggaa > 2:4961732/1‑93 (MQ=12)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..G.aag > 1:2070495/1‑99 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc < 1:1249727/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..G.aagcc > 2:1913058/1‑97 (MQ=18)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcca < 1:4722280/101‑6 (MQ=255)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ACGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGCC..G.aagaca > 2:883429/1‑96 (MQ=18)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccag < 1:4838278/97‑7 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccaga < 2:4252111/98‑8 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccaga > 2:628593/4‑94 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACAGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..G.aagccaga > 2:918705/4‑94 (MQ=18)
cgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagag < 1:900261/99‑9 (MQ=255)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagagg < 2:431362/100‑10 (MQ=255)
tCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagaggg < 1:2566573/101‑11 (MQ=255)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagc > 2:3927288/1‑99 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagc > 1:101779/1‑99 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:2783474/1‑98 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:128492/1‑98 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.c.c > 1:2722749/1‑101 (MQ=18)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAG.AGGGGGGC.AGCG.cc.c.cc < 2:2306639/101‑1 (MQ=17)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.c.cc > 2:224865/1‑101 (MQ=17)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.c.cc > 2:593976/1‑101 (MQ=18)
ccccccGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.c.ccc > 2:2990638/1‑100 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.c.ccc > 2:1216098/1‑100 (MQ=18)
ccccGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.c.ccctg < 1:1153654/101‑4 (MQ=17)
cccGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.c.ccctgc < 2:1085111/101‑5 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.C.CCTGccc > 1:3401375/1‑101 (MQ=17)
gggATATTTGCGGCAAGATGAAGGGGC.ATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CC.C.CCTGcccc > 2:5233772/1‑101 (MQ=0)
ggATATTTGCGGCAAGATGAAGGGGC.ATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CC.C.CCTGCCCcg < 1:1558387/101‑1 (MQ=0)
ggATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.C.CCTGCCCcg < 2:5706753/101‑1 (MQ=17)
ggATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGAGC.AGCGCCC.C.CCTGCCCcg > 1:3456871/1‑101 (MQ=17)
gATATTTGCGGCAAGATGAAGGGGC.ATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CC.C.CCTGCCCcgc > 2:4053107/1‑100 (MQ=0)
gATATTTGCGGCAAGATGAAGGGGC.ATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CC.C.CCTGCCCcgc > 1:2232856/1‑100 (MQ=2)
gATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAA.CCAGAGGGGGGC.AGCGCCC.C.CCTGCCCcgg > 1:5262642/1‑101 (MQ=17)
atatTTGCGGCAAGATGAAGGGGC.ATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CC.C.CCTGCCCcgcc > 2:1511896/1‑99 (MQ=2)
atatTTGCGGCAAGATGAAGGGGC.ATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CC.C.CCTGCCCcgcc < 2:3021862/101‑3 (MQ=2)
atatTTGCGGCAAGATGAAGGGGC.ATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CC.C.CCTGCCCcgcc > 1:2461050/1‑99 (MQ=2)
atatTGGCGGCAAGATGAAGGGGC.ATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CC.C.CCTGCCCcgcc < 1:5657283/101‑3 (MQ=2)
tGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.C.CCTGCCCCGGCGGTcc < 2:5492465/101‑1 (MQ=17)
gcagcaAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.C.CCTGCCCCGGGGGGCCg > 1:4383610/1‑101 (MQ=14)
cagcaAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.CCAC.CCTGCCCCGGCGGTCCgg > 2:1786314/1‑100 (MQ=18)
gcaAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.C.CCTGCCCCGGCGGTCCGTgg > 2:329376/1‑101 (MQ=18)
aGATGAAACCGG.ATTCCGTTCATCTTGCCTGAAATATTCCGGGGGGTGAA.TGGA..GAAG.CCAGAGGGGGGC.AGCGCCC.C.CCTGCCCCGGCGGTCCGTggcgg < 1:2846712/101‑1 (MQ=9)
aaaCCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.C.CCTGCCCCGGCGGTCCGTGGCGGCGCCt > 1:5411536/1‑101 (MQ=18)
aaCCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.C.CCTGCCCCGGCGGTCCGTGGCGGCGCCtt > 1:3949650/1‑101 (MQ=18)
ccGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGG..GAAG.CCCGAGGGGGGC.AGCG.CC.CGCCTGCCCCGGCGGCCCGGCGCGGCGCCTGGa > 1:5192999/1‑101 (MQ=9)
|
CGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGT.AA.GGGGGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGG.ATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.CC.C.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC > NC_014034/2493917‑2494115
Base quality scores:
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 25 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|