| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,048 | G→A | 10.1% | intergenic (+96/‑146) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,048 | 0 | G→A | 10.1% | 29.6 ‑0.3 ‑0.0 | 138 | intergenic (+96/‑146) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (9/5): ref base (70/54): total (79/59) | ||||||||||
| Fisher's exact test strand distribution p-value = 7.77e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.89e-01 | ||||||||||
Only 100 of 163 total aligned reads displayed.
TAAGGGGGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.CCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCA > NC_014034/2493950‑2494147
|
aaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggg > 2:190980/4‑101 (MQ=255)
aggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCggggg < 1:2298560/99‑1 (MQ=255)
aggggggggCGCTGCCCCCCGTCCGCAAGCGGACCCCCCCCGGGGTTTTTGCCGCCAGCTGACACCGGATGCCCTTCATCTTCCCCTAAATAATCCggggg > 2:2288534/3‑101 (MQ=12)
ggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTg < 1:5728365/101‑1 (MQ=255)
ggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.aa < 1:4076109/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.t < 1:679154/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.t < 1:1563632/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.t < 1:1688307/101‑1 (MQ=255)
gcgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGG.AA.Tgg > 1:1959831/1‑101 (MQ=255)
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..g < 2:5573735/101‑1 (MQ=255)
cTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTTCCGCAAGATGAAACCGGATGCCTTTCATCTGGCCCGAAATATCCCGGGGGGTG.AA.TGGcaa > 2:1679067/1‑99 (MQ=21)
cTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.a < 1:536070/101‑1 (MQ=255)
tGCCCCCCGTCCGCAAGCGGGCTCCCCCCGGGATATTTGCAGCAAGATGCAACCGGGTGCCTTTCCTCTTTTCCCAAATAACCCGGGGGGGG.acaggggaa > 2:4961732/1‑93 (MQ=12)
tGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGG.AA.TGGC..G.aa > 1:5283323/1‑100 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aag < 2:4908975/101‑3 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aag < 1:4336343/101‑3 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagcc < 2:3399449/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagcc < 1:1249727/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCG.AA.TGGC..G.aagcc > 2:1913058/1‑97 (MQ=18)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagcca < 1:4722280/101‑6 (MQ=255)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGACGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGCC..G.aagaca > 2:883429/1‑96 (MQ=18)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccaga < 2:4252111/98‑8 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACAGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGG.AA.TGGC..G.aagccaga > 2:918705/4‑94 (MQ=18)
cgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccagag < 1:2977745/99‑9 (MQ=255)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccagagg < 2:1256930/100‑10 (MQ=255)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccagagg < 2:431362/100‑10 (MQ=255)
tCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.aagccagaggg < 1:2566573/101‑11 (MQ=255)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagc > 2:3927288/1‑99 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagc > 1:101779/1‑99 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:2783474/1‑98 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:128492/1‑98 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagcgc > 1:2080257/1‑97 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc > 2:596877/1‑101 (MQ=18)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.ccc > 1:2841308/1‑101 (MQ=18)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAGCCAG.AGGGGGGC.AGCG.ccccc < 2:2306639/101‑1 (MQ=17)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.ccccc > 2:593976/1‑101 (MQ=18)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cccccc > 2:2990638/1‑100 (MQ=17)
ccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cccccctg < 1:1153654/101‑4 (MQ=17)
cccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cccccctgc < 2:1085111/101‑5 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGccc < 1:2517749/101‑1 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGccc > 1:3401375/1‑101 (MQ=17)
gggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGcccc > 2:5233772/1‑101 (MQ=0)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCcg < 2:5706753/101‑1 (MQ=17)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGAGC.AGCGCCCCCCTGCCCcg > 1:3456871/1‑101 (MQ=17)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgc > 2:4053107/1‑100 (MQ=0)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgc > 2:1503599/1‑100 (MQ=2)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCcgg > 1:5398684/1‑101 (MQ=17)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAA.CCAGAGGGGGGC.AGCGCCCCCCTGCCCcgg > 1:5262642/1‑101 (MQ=17)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgcc > 2:1511896/1‑99 (MQ=2)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgcc > 1:97697/1‑99 (MQ=2)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgcc < 2:3021862/101‑3 (MQ=2)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCcggc > 2:1738181/1‑101 (MQ=17)
atatTGGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgcc < 1:5657283/101‑3 (MQ=2)
tatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgccg > 2:496992/1‑101 (MQ=2)
ttGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgccggat < 2:3238589/101‑3 (MQ=2)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCGGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTcc < 2:3938891/101‑1 (MQ=18)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGGGGGCCg > 1:4383610/1‑101 (MQ=14)
gcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTgg > 2:329376/1‑101 (MQ=18)
aGATGAAACCGGATTCCGTTCATCTTGCCTGAAATATTCCGGGGGGTG.AA.TGGA..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTggcgg < 1:2846712/101‑1 (MQ=9)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCt > 1:5411536/1‑101 (MQ=18)
aaCCGGTTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCtt < 1:155720/101‑1 (MQ=17)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCtt > 1:5728138/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGCCGGCGCCTTg > 2:1191765/1‑101 (MQ=17)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc > 1:745251/1‑101 (MQ=18)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg > 2:3084474/1‑101 (MQ=17)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgg > 2:342131/1‑101 (MQ=18)
tcccTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc < 2:1154967/99‑1 (MQ=17)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc > 2:2526353/1‑101 (MQ=18)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc < 2:5283033/101‑1 (MQ=17)
gCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGGCCGTGGCGGGGCCTTGAcggcgg > 1:1075048/1‑98 (MQ=14)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 1:3962078/1‑101 (MQ=18)
tttCTTCTTGCCCGAAATATCGCGGGGGGTG.AA.GGGC..GAAG.CGAGAGGGGGGCAGCCC.CCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg < 1:4956912/101‑1 (MQ=21)
tttCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg > 2:1404975/1‑101 (MQ=18)
tttCATCTGGCCCGAAACATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg < 2:5191648/101‑1 (MQ=17)
ttCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGGggggg > 1:2046882/1‑101 (MQ=17)
tCATCTTGCCCGAAATAGCCCGGGGGGTG.AA.TGGC..GAAG.CCGGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc < 1:3956981/101‑1 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg > 2:786796/1‑101 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGAGGCGGCGCCTTGACGGGCGGGGGcgcg > 1:4266567/1‑101 (MQ=18)
ttGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCcgg > 2:2503471/1‑101 (MQ=18)
tGCCCGAAATATCCCGGGGGGGG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcgcacgc > 2:5426171/1‑97 (MQ=18)
ccGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 2:5639062/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 2:5414592/101‑1 (MQ=18)
cGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTa < 1:191000/101‑1 (MQ=18)
gAAATATGCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCAGCGG.TCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 1:2674986/101‑1 (MQ=21)
gAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa > 2:2183950/1‑101 (MQ=18)
aaaTATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc < 2:4504181/101‑1 (MQ=18)
aaTATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAcc > 1:215147/1‑101 (MQ=21)
aaTATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCACGGCCTTGACGGGCGGGGGCGCGGGCATTaaac > 1:4992312/1‑99 (MQ=17)
atatCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg > 2:5222576/1‑101 (MQ=21)
atatCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg > 1:4725475/1‑101 (MQ=21)
atatCCCGGGGGGGGAAA.GGGC..A.AG.CCAAAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg < 2:1644352/101‑1 (MQ=25)
tatCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGa < 1:4430595/101‑1 (MQ=21)
atCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGGCGGGGGGGGGGGCGGGGATTAACCGaa > 1:3943106/1‑101 (MQ=12)
tCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:3685044/101‑1 (MQ=21)
cccGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGAATTAACCGAAAt < 1:3137359/101‑1 (MQ=21)
cccGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTCGACGGGCGGGGGCGCGGGCATTAACCGAAAt < 1:5126909/101‑1 (MQ=21)
ccGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt > 2:4893213/1‑101 (MQ=21)
ccGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt > 2:3832046/1‑101 (MQ=21)
ggggggTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCGTTAACCGAAATTga > 1:447796/1‑100 (MQ=21)
gggggTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa > 2:636029/1‑101 (MQ=25)
|
TAAGGGGGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.CCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCA > NC_014034/2493950‑2494147
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|