| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,075 | C→G | 10.1% | intergenic (+123/‑119) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,075 | 0 | C→G | 10.1% | 28.3 0.0 ‑0.8 | 139 | intergenic (+123/‑119) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (9/5): ref base (77/48): total (86/53) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.55e-01 | ||||||||||
Only 100 of 151 total aligned reads displayed.
AAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.CCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGCCCA > NC_014034/2493977‑2494170
|
aaGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCa < 2:1919512/101‑1 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagc > 1:101779/1‑99 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagc > 2:3927288/1‑99 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:128492/1‑98 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:2783474/1‑98 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCagcgc > 1:2080257/1‑97 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc > 2:596877/1‑101 (MQ=18)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.ccc > 1:2841308/1‑101 (MQ=18)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAGCCAG.AGGGGGGC.AGCG.ccc.cc < 2:2306639/101‑1 (MQ=17)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.ccc.cc > 2:224865/1‑101 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.ccc.ccc > 2:2990638/1‑100 (MQ=17)
cccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.ccc.ccctgc < 2:1085111/101‑5 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGccc > 1:3401375/1‑101 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGccc < 1:2517749/101‑1 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcg < 1:1558387/101‑1 (MQ=0)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgc > 2:1503599/1‑100 (MQ=2)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgc > 1:2232856/1‑100 (MQ=2)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgc > 2:4053107/1‑100 (MQ=0)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCcgg > 1:5353248/1‑101 (MQ=18)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAA.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCcgg > 1:5262642/1‑101 (MQ=17)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgcc < 2:3021862/101‑3 (MQ=2)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCcggc > 2:1738181/1‑101 (MQ=17)
tatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgccg > 2:254360/1‑101 (MQ=2)
tatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgccg > 2:496992/1‑101 (MQ=2)
atTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgccgg < 2:577947/101‑1 (MQ=2)
atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGG.AA.TGGC..GAAG.CCAGAGGGGGGC.CGCGACCC.CCTGCCCcggcgg > 1:4038341/1‑101 (MQ=17)
ttGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTG.AATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCC.CCTGCCCcgccggat < 2:3238589/101‑3 (MQ=2)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTcc < 2:5492465/101‑1 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTggc > 2:1579395/1‑101 (MQ=17)
aGATGAAACCGGATTCCGTTCATCTTGCCTGAAATATTCCGGGGGGTG.AA.TGGA..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTggcgg < 1:2846712/101‑1 (MQ=9)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTggcgg > 2:4204943/1‑101 (MQ=18)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCt < 2:101759/101‑1 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCt > 1:5411536/1‑101 (MQ=18)
acccGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGGGCCtt < 1:1954441/99‑1 (MQ=17)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCtt > 1:5728138/1‑101 (MQ=18)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCtt > 1:3949650/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGCCGGCGCCTTg > 2:1191765/1‑101 (MQ=17)
ccGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGG.AA.TGGG..GAAG.CCCGAGGGGGGC.AGCG.CCCGCCTGCCCCGGCGGCCCGGCGCGGCGCCTGGa > 1:5192999/1‑101 (MQ=9)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg > 2:3084474/1‑101 (MQ=17)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgg > 2:342131/1‑101 (MQ=18)
aTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTgcgggg > 1:110544/1‑96 (MQ=17)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCAGCAC.CCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc > 1:5365492/1‑101 (MQ=18)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc < 2:5283033/101‑1 (MQ=17)
ccTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcgg < 2:5245935/101‑1 (MQ=17)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 1:138099/1‑101 (MQ=17)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 1:3962078/1‑101 (MQ=18)
tttCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg > 2:1404975/1‑101 (MQ=18)
tttCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg < 1:5669188/101‑1 (MQ=17)
tttCATCTGGCCCGAAACATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg < 2:5191648/101‑1 (MQ=17)
tCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGT..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggggg > 2:390890/1‑100 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg > 2:786796/1‑101 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGAGGCGGCGCCTTGACGGGCGGGGGcgcg > 1:4266567/1‑101 (MQ=18)
cTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCCCCTTGACGGGCGGGGGCGCgg < 1:5455301/101‑1 (MQ=18)
ttGCCCGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCcgg > 2:2503471/1‑101 (MQ=18)
tGCCCGAAATATCCCGGGGGGGG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcgcacgc > 2:5426171/1‑97 (MQ=18)
ccGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 2:5639062/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 2:5414592/101‑1 (MQ=18)
gAAATATGCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGCAGCGG.TCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 1:2674986/101‑1 (MQ=21)
gAAATATCCCGGGGGGTG.AA.TGGC..G.AA.GCCAGAGGGGGC.AGCGCCCC.CCCGCCCCCGCGGGCCGTGGCCGCGGCCTGACCGGGGGGGGCGCggggccttac > 2:1157928/1‑94 (MQ=0)
aaaTATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc < 2:4504181/101‑1 (MQ=18)
aaTATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAcc > 1:215147/1‑101 (MQ=21)
aaTATCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCACGGCCTTGACGGGCGGGGGCGCGGGCATTaaac > 1:4992312/1‑99 (MQ=17)
atatCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg > 1:4725475/1‑101 (MQ=21)
atatCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg > 2:5222576/1‑101 (MQ=21)
atatCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGGCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTTACCg > 1:4980211/1‑101 (MQ=18)
atatCCCGGGGGGGGAAA.GGGC..A.AG.CCAAAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg < 2:1644352/101‑1 (MQ=25)
tatCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGa < 1:4430595/101‑1 (MQ=21)
atCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGGCGGGGGGGGGGGCGGGGATTAACCGaa > 1:3943106/1‑101 (MQ=12)
tCCCGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:3685044/101‑1 (MQ=21)
cccGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCTCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAt < 1:4381020/101‑1 (MQ=21)
cccGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGAATTAACCGAAAt < 1:3137359/101‑1 (MQ=21)
ccGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt > 2:4893213/1‑101 (MQ=21)
ccGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt > 2:3832046/1‑101 (MQ=21)
ccGGGGGGTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt > 1:4447184/1‑101 (MQ=21)
ggggggTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc < 2:4826904/101‑1 (MQ=25)
gggggTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa > 2:636029/1‑101 (MQ=25)
gggggTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa > 2:3301323/1‑101 (MQ=25)
ggggTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCaa < 1:2698124/101‑1 (MQ=25)
ggTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa < 1:189655/101‑1 (MQ=25)
gTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAg < 1:4768207/101‑1 (MQ=25)
gTG.AA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAg < 1:341077/101‑1 (MQ=25)
gcgaagccagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGAtgctgc < 1:780726/91‑1 (MQ=38)
gcgaagccagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGAtgctgc < 2:2080140/91‑1 (MQ=38)
cgaagccagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCCTTAACCGAAATTGCAACAGATGCTGCg > 1:4926267/10‑101 (MQ=37)
gaagccagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGa > 1:3711867/9‑101 (MQ=38)
gaagccagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGa > 2:1691036/9‑101 (MQ=38)
gaagccagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGa < 1:2477353/93‑1 (MQ=38)
aagccagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGAt > 2:5749165/8‑101 (MQ=38)
agccagaGGGGGGCAGCGG.CCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGTAATTGCAACAGATGCTGCGGTc > 2:2420137/7‑101 (MQ=255)
agccagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATc > 2:1148991/7‑101 (MQ=38)
gccagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGACGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATcc > 1:4951043/6‑101 (MQ=38)
ccagaGGGGGGCAGCGG.CCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCt < 1:970876/97‑1 (MQ=255)
ccagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCt > 1:1453104/5‑101 (MQ=38)
ccagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCt < 1:1913167/97‑1 (MQ=38)
cagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTc > 1:2953451/4‑101 (MQ=38)
cagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTc > 2:3603209/4‑101 (MQ=38)
cagaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTc < 1:2075231/98‑1 (MQ=38)
agaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCg > 2:1312977/3‑101 (MQ=39)
gaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGc > 1:1051882/2‑101 (MQ=39)
gaGGGGGGC.AGCGCCCC.CCTGCCCCGGCGGTCCGCGGGGGCGCCCTTCCGGGCGGGGGCGCGGGGATTAACCGCAATTGGAACAGAAGCTCCGATCCCCGc > 1:1130333/2‑101 (MQ=16)
|
AAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTG.AA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.CCC.CCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGCCCA > NC_014034/2493977‑2494170
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|