Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_014034 3,596,943 Δ1 bp 4.2% coding (161/1467 nt) RCAP_rcc03392 → hemolysin D

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0140343,596,9430C→. 4.2% 8.8 ‑0.4 ‑0.5118coding (161/1467 nt)RCAP_rcc03392hemolysin D
Reads supporting (aligned to +/- strand):  new base (2/3):  ref base (60/52):  total (63/55)
Fisher's exact test strand distribution p-value = 6.65e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 3.02e-01

Only 100 of 152 total aligned reads displayed.

GCAATCCCCAGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTCGGGCTTTGGTCGGTG  >  NC_014034/3596843‑3597043
                                                                                                    |                                                                                                     
gCAACCCCCAGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGc                                                                                                       <  2:2159485/101‑1 (MQ=255)
  cctCCCCAGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGccc                                                                                                     <  1:1854093/99‑1 (MQ=255)
  aaTCCCCAGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGccc                                                                                                     >  2:1995976/1‑101 (MQ=255)
   acccccAGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGcccc                                                                                                    <  2:873496/99‑1 (MQ=255)
   acccccAGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGcccc                                                                                                    <  1:3255844/99‑1 (MQ=255)
   aTCCCCAGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGcccc                                                                                                    >  2:2017887/1‑101 (MQ=255)
   aTCCCCAGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGcccc                                                                                                    <  1:1664766/101‑1 (MQ=255)
     ccccAGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGcccccc                                                                                                  <  1:2690528/101‑1 (MQ=255)
     ccccAGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGcccaga                                                                                                  >  2:1853973/1‑98 (MQ=255)
        cAGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGccccccccc                                                                                               <  2:2268397/101‑1 (MQ=255)
         aGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGGGCGAACCGCAAGcccccccccg                                                                                              >  2:101790/1‑100 (MQ=255)
          catctaaGCCCCCCGCCCCCCTCGGCCCGGCCGCGTTGCAGGCGGCAGAGGCCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCg                                                                                             <  2:68984/96‑1 (MQ=255)
           ccGCAGGCCACCCGCCCCCCTCGGCCCGCCCGCGTTGAAGGCCCCAGCGCCCGGCCTCCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCgg                                                                                            <  2:1696731/101‑1 (MQ=255)
           ccGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGGGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCgg                                                                                            <  2:2615174/101‑1 (MQ=255)
            cGCAAGCCCCCCGCCCCCCTCGGCCCGACCGGGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGc                                                                                           >  1:3777513/1‑101 (MQ=255)
              cacgcccccccccccccCCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCg                                                                                         <  1:919709/98‑1 (MQ=255)
              cAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGccc                                                                                         >  2:3365993/1‑100 (MQ=255)
              cAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCCGccc                                                                                         >  2:3268623/1‑100 (MQ=255)
                 gccccccgccccccTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGCAGCCCCCCCCCCGGCCGAgg                                                                                      >  1:3221980/1‑101 (MQ=255)
                     cccgccccccTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCCGGGcg.cg                                                                                 >  1:764519/1‑101 (MQ=255)
                     cccgccccccTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGACCCCCCCCCGGcccgggggcg                                                                                  >  2:1437428/1‑93 (MQ=255)
                      ccgccccccTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.Cgg                                                                                >  2:3949725/1‑101 (MQ=255)
                       ccccccccTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGa                                                                               <  1:1829844/99‑1 (MQ=255)
                        gccccccTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.Cggtt                                                                              >  2:300871/1‑99 (MQ=255)
                         ccccccTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCTGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGgccacggga                                                                              <  2:3407858/101‑8 (MQ=255)
                         ccccccTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAG.CCCCCCCCCGGCCGAGGCG.CGGAtct                                                                            <  1:805149/101‑1 (MQ=255)
                         ccccccCCGGCCCGCCCGCGTTGCAGGGGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGAtc                                                                             <  2:2694228/101‑1 (MQ=255)
                         ccccccAC.GCCCGACCGCGGTCGAGGCGGCGGGGCCCGGGCTTTCCGCCCCGGCCCGCCGGAGCCAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGAtct                                                                            <  2:3503800/101‑1 (MQ=255)
                           ccccTCGGCCCGACCGGGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGAtctc                                                                           <  2:944079/101‑1 (MQ=255)
                           ccccTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGAtctc                                                                           >  2:1794907/1‑101 (MQ=255)
                               tgtgCCCGACCGGGTTGCAGGCGGCAGAGACCGGCTTTCCCGCCCCTGCCCGCCGGAGCCAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGccc                                                                       <  1:1466223/98‑1 (MQ=255)
                                cGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGGTCTCGcccc                                                                      >  2:1612311/1‑101 (MQ=255)
                                   cccGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGGG.CGGATCTCGCCCCggg                                                                   >  2:4205027/1‑101 (MQ=255)
                                   cccGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.GGGATCCCCCCCCggg                                                                   >  2:1764081/1‑101 (MQ=255)
                                     cGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCggggg                                                                 >  1:534370/1‑99 (MQ=255)
                                      gACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGGG.CGGATCCCCCCCCGGGGgg                                                                >  2:1953448/1‑101 (MQ=255)
                                        ccGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGgcg                                                              <  1:3313229/101‑1 (MQ=255)
                                           cgTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGGGCGAACCGGAAGCCCCCCCCCCCGCCGGGGCG.GGGGGCTCCCCCCGGGCGgcgccc                                                           >  1:3535493/1‑99 (MQ=255)
                                           cgTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCgctg                                                           <  2:1899829/101‑1 (MQ=255)
                                            gTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGGGGCgctgc                                                          >  2:159722/1‑101 (MQ=255)
                                            gTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAG.CCCCCCCCCGGCCCGGGGG.CGGGACTCCCCCCCGGGGGGgccgcc                                                         >  1:1667611/1‑100 (MQ=255)
                                             ttGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAG.CCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGctgctg                                                        <  1:29605/101‑1 (MQ=255)
                                              tGCGGGCGGCAGAGCCCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGctgctg                                                        <  2:754011/101‑1 (MQ=255)
                                              tGCAGGCGGCAGAGCCCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGctgctg                                                        <  1:2189334/101‑1 (MQ=255)
                                              tGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGGGGCgcggcgg                                                        >  1:3431660/1‑99 (MQ=255)
                                               gCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGGGGCG.CGGATCTCGCCCCGGGTGGCGctgctgt                                                       >  2:394510/1‑100 (MQ=255)
                                               caaGGCGGCAGAGACCGCCCCTCCCGCCCCGGCCCGCCGGAGCCAACCGGAATCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGa                                                       <  1:1437530/99‑1 (MQ=255)
                                                cAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGGCCCGGGGGGCgctgctact                                                      >  2:3764020/1‑98 (MQ=255)
                                                cAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGAt                                                      <  1:2438698/101‑1 (MQ=255)
                                                cAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGCCCG.GGCGCCGGATCTGGCCCCGGGGGGCgctgcgcgt                                                      >  1:3055325/1‑97 (MQ=255)
                                                 aGGCTGCAGACACCGGGCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATc                                                     <  1:711541/101‑1 (MQ=255)
                                                    gagcAGAGGCCCGTCTCCCCGCCCCGGCCCGCCGGAGCCAACCGGAATCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGc                                                  <  2:4025092/99‑1 (MQ=255)
                                                     ggcAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGGGGCGCTGCTGATCGGCt                                                 >  1:1961669/1‑101 (MQ=255)
                                                      gcAGAGCCCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTa                                                <  1:2776724/101‑1 (MQ=255)
                                                          agaCCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGGGGCC.CGGATCTCGCCCCGGGGGGCGCTGCTGATCGGCTATGTc                                            >  1:664927/1‑101 (MQ=255)
                                                           gaCCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCa                                           <  1:3138423/101‑1 (MQ=255)
                                                            aCCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCC.GCCGAGGCG.CGGATCTCGCCCCGGGTGGGGCTGCTGATCGGCTATGTCCCg                                         >  2:3457838/1‑101 (MQ=255)
                                                            aCCGGCCTTCCCGCCCCGGCCCGACGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGCGGGGCTCGCGATCGGCTATGTCAc                                          >  2:2912143/1‑101 (MQ=255)
                                                            aCCGGCCTCCCCCGCCCGGCCCGCCGGAGCAAACCGGAACCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCAc                                          <  2:2327687/101‑1 (MQ=255)
                                                              cGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGGGGGG.CGGATCTCGCCCCGGGGGGGGCTGCTGATCGGCTACGTCACGc                                        >  1:818659/1‑101 (MQ=255)
                                                                gCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCtt                                      <  1:1795026/101‑1 (MQ=255)
                                                                gCCTCCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCtt                                      <  2:4079122/101‑1 (MQ=255)
                                                                gCCATCCCGCCCCGACCCGCCGGGGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCtt                                      <  2:3483468/101‑1 (MQ=255)
                                                                 ccTTCCCGCCCCGGCCCGCCGGCGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCTGCTATGTCAAGCTTg                                     >  2:1817815/1‑101 (MQ=255)
                                                                 ccTTCCCCCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTg                                     <  1:3366238/101‑1 (MQ=255)
                                                                   ttCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGGTCTCGCCCCGGGCGGCGGGGCGGATCGGCTATGTCACGCTTGCg                                   >  2:4191753/1‑101 (MQ=255)
                                                                    tCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCCGGGGG.CGGGTCTCGCCCCGGGGGGGGCTGCCGATGGGCCATGTCCCGccttgat                                  >  1:11180/1‑95 (MQ=255)
                                                                    ccccGCCCCGGCCCGCCGGAGGCAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCgg                                  <  1:987108/100‑1 (MQ=255)
                                                                     cccGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGGGCTGCTGATCGGCTATGTCACGCTTGCGGt                                 >  1:1056302/1‑101 (MQ=255)
                                                                       cGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGGGGCG.CGGATCTCGCCCCGGGGGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTc                               >  1:1782962/1‑101 (MQ=255)
                                                                        gCCCCGCCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCt                              <  1:681074/101‑1 (MQ=255)
                                                                         ccccGGCCCGCCGGGGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTg                             <  2:1073752/101‑1 (MQ=255)
                                                                         ccccGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTg                             <  1:884919/101‑1 (MQ=255)
                                                                          cccGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGGGGCG.CGGGTCTCGCCCCGGGGGGCGCTGCTGATCGGCTATGTAACGCTTGCGGTTCTgg                            >  2:2228944/1‑101 (MQ=255)
                                                                          cccGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTgg                            <  1:3949985/101‑1 (MQ=255)
                                                                            cGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGGGGGGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTc                          >  1:1914587/1‑101 (MQ=255)
                                                                             ggCCCGGCGGGGCCGACCGGGAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCg                         <  1:3313670/101‑1 (MQ=255)
                                                                             ggCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGGTGTCCCCCCGGGTGGCACTGCTGGTCGGCTTTGTCACGCTTGCGGttgcgggcg                         >  1:3731704/1‑94 (MQ=255)
                                                                             cgCCCGCGGGGGGAAACCGGAGCCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCg                         <  1:2834116/100‑1 (MQ=255)
                                                                                   ccgGGGCGACCCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCt                   <  1:1203464/101‑1 (MQ=255)
                                                                                   ccgGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATTTCGCCCCGGGGGGGGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCt                   >  2:2459847/1‑101 (MQ=255)
                                                                                   ccgGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCt                   <  1:2017421/101‑1 (MQ=255)
                                                                                     ggAGCGAACCGGAAGCCCCCCCCCCGGCCGGGGCG.CGGATCTCCCCCCGGGGGGCGCGGCGGATCGGCTATGTCACGCTTGGGGTTCTGGTCGGGGGCTTc                 >  1:2725144/1‑101 (MQ=255)
                                                                                     ggAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGGG.CGGATCTCGCCCCGGGCGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGTTCGGGGGCTTc                 >  2:3317834/1‑101 (MQ=255)
                                                                                     ggAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGGGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTc                 >  1:2243078/1‑101 (MQ=255)
                                                                                      gAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTCg                <  1:3459223/101‑1 (MQ=255)
                                                                                       gaggAACCCGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTCgg               <  2:2479237/98‑1 (MQ=255)
                                                                                       aGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGGGGCGCTGCTGATCGGCTATGTCACGCTTGGGGTTCTGGGGGGGGGCTTCgg               >  2:521580/1‑101 (MQ=255)
                                                                                        aagAACCGGAAACCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTCggg              <  2:2724938/99‑1 (MQ=255)
                                                                                         cGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTCGGGc             <  2:732012/101‑1 (MQ=255)
                                                                                         cGAACCGGAAGCCCCCCCCCCCGCCGGGGGG.CGGATCTCGCCCCGGGGGGGGCTGCTGGTTGGCTATGTCACGCTTGGGGGTTTGGGCGGGGGCTTCGGGc             >  2:3723347/1‑101 (MQ=255)
                                                                                           aaCCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTCGGGCtt           <  2:940951/101‑1 (MQ=255)
                                                                                             ccGGAAGCCCCCCCCCCGGCCGGGGCG.CGGATCTCGCCCCGGGGGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGCCGGGGGCTTCGGGCTTTg         >  1:1043248/1‑101 (MQ=255)
                                                                                             ccGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTCGGGCTTTg         <  2:2812846/101‑1 (MQ=255)
                                                                                              cGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTCGGGCTTTgg        <  1:1909439/101‑1 (MQ=255)
                                                                                              cGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGGGGCGCTGCTGATCGGCTATGTCCCGCTTGCGGTTCTGTTCGGGGGGTTCGGGCTTTgg        >  2:1152461/1‑101 (MQ=255)
                                                                                               ggAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTCGGGCTTTGGt       <  2:2420458/101‑1 (MQ=255)
                                                                                                gAAGCCCCCCCCCCGGCCGAGGGG.CGGCTCTCGCCCCGGGGGGCGCTGCTGATCGGCTATTTCCCGCTTGCGGTTCTGGCCGGGGGCTTCGGGCTTTggcg      >  2:1712934/1‑99 (MQ=255)
                                                                                                gAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTCGGGCTTTGGTc      <  1:2463929/101‑1 (MQ=255)
                                                                                                    ccccgcgcccGGACGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCCGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTCGGGCTTTGGTCggtg  <  2:3530186/101‑1 (MQ=255)
                                                                                                    |                                                                                                     
GCAATCCCCAGCCGCAAGCCCCCCGCCCCCCTCGGCCCGACCGCGTTGCAGGCGGCAGAGACCGGCCTTCCCGCCCCGGCCCGCCGGAGCGAACCGGAAGCCCCCCCCCCGGCCGAGGCG.CGGATCTCGCCCCGGGTGGCGCTGCTGATCGGCTATGTCACGCTTGCGGTTCTGGTCGGGGGCTTCGGGCTTTGGTCGGTG  >  NC_014034/3596843‑3597043

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG